<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16682

Description mediator of RNA polymerase II transcription subunit 15a-like
SequenceMPGVSQNSVSNSVGQGAAPDIYANAQRQMPGRQHQQQMISQQKQQFQNQLIYHQQFQQRLLKRKLQHPSLLQPHLQQQQLQQSLLQPTQLQSSQQSLMQMSSGLQSGQSTIQQPQPTTMQSAAQPGLQQNQLNSIQQSVPSLLQQHPQSVARQQQHVQPSIHQQTPSLQQQLTRDFHIFLKPHRAASVDSTAQTGHAGVSDLQEEIYQKIKSMRDMYFADINELYRRIALKFQQHDAFIPPAKPSEQYEKMKNFKMMLERTLAFLQISKNNIQPGLKERIPLYEKQIVNILTSNKKKVVPSQSQG
Length305
PositionTail
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.05
Grand average of hydropathy-0.830
Instability index81.41
Isoelectric point10.06
Molecular weight34908.21
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16682
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     253.73|      40|      40|      57|      96|       1
---------------------------------------------------------------------------
    4-   41 (52.70/15.23)	VSQNSVSNSVGQGAAPDIYANA..QRQMPGR..QH.QQQMISQ
   42-   74 (47.10/12.80)	.QKQQFQNQLIYHQQ........fQQRLLKRKLQH.PSLLQPH
   75-  106 (46.86/12.70)	LQQQQLQQSLLQPTQLQSSQQS.....L....MQM.SSGLQS.
  107-  146 (47.22/12.86)	.GQSTIQQP..QPTTMQSAAQPglQQNQLNSIQQSvPSLLQQH
  147-  183 (59.85/18.32)	PQSVARQQQHVQPSIHQQTPSL..QQQ.LTRDF.H..IFLKPH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.00|      12|      43|     205|     221|       2
---------------------------------------------------------------------------
  205-  216 (21.95/19.28)	EIYQKIKSMRDM
  246-  257 (23.05/ 7.79)	EQYEKMKNFKMM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16682 with Med15 domain of Kingdom Viridiplantae
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