<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16681

Description pre-mRNA-processing protein 40A-like isoform X4
SequenceMASNSQFSGVQPLRPAVVRSAVPPQNFGPPMPMQFGHVVPAQQTHQFIPAASQQFRPVGQGVHGTNIGMPSDQTQMPHFSQPAHHLPPRSGPAAPPSSQAVPMPYVQPNRPMTSGTLQPQQNPQMPHNHLPNFGGVGMPLSSSYTFTTSYGQPQHTFNTPSQYQPASQMHAPVMPAVGQPWSTHGTQNVPLVTHLVQAAAQSSAAAGTVPTTNAQPSSAEQASSDWQVHTSDDGKRYYYNKKTRQSSWEKPFELMTPVERADASTDWKEFSTPDGRTYYYNKVTKVSKWIIPEELKLAREQALRAAAAQPCTETGAASAVPAAPVVSSGEIPPATASVTPEATYAVVSSPVSVSANAIVPPGVMASVSPSVAVVPSAGIPSSSSLGILNTVGASNPQTPVTPLLAPVPANTVVPTVAIEAALSNAKSNHDNSSLVNIASLPDGASAQDLEEAKKGMPVTGRSNAASLEEKTIDEEPFVYANKQEAKNAFKTLLESANVESDMTWEQAMRVIISDKRYGALKTLGERKQAFHEYLGQRKKQEAEERRIKQKKAREDFTRMLEECTELTSSTRWSKAVTMFENDERFNAVERARDREDLFESYLLDLLKKERAKAAEEHKQNIMDYRAFLESCDFIKANSQWRKVQDRLEDDERCSRLEKIDRLEIFQEYIHNLEKEEEEQRKKQKEQLRRQERKNRDEFRKLMEGHVAAGILTAKTHWRDYCMQVKDLPPYKAVASNTSGSTPKDLFEDVAEELDKQYHEDKVQIKEAIKIQKIALASSWMFEDLKVAISADDSLKGISEINMKLVFDELLERLREKEEKEAKKHQRLADNFSDLLYSIKEITASSGWEDCKSLFEDTQEYRSIGDENFVRGIFEEHVARLREKLKEKERKREEEKLRIMYQVTEARDFYM
Length910
PositionUnknown
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.680
Instability index55.89
Isoelectric point6.13
Molecular weight101878.32
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16681
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     457.25|      66|      66|     544|     609|       1
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  487-  553 (81.66/47.05)	NAFKTLL.ESAN...VESDMTWEQAMRVIIS.......DKRYGAL...KTLGERKQAFHEYLGQRKK..QE.aeER.......RIKQKKAR
  554-  621 (91.47/53.54)	EDFTRMLEECTE...LTSSTRWSKAVTMFEN.......DERFNAV...ERARDREDLFESYLLDLLK..KE.raKA.......AEEHKQNI
  622-  695 (82.51/47.61)	MDYRAFLESCDF...IKANSQWRKVQDRLED.......DERCSRL...EKI.DRLEIFQEYIHNLEK..EE.eeQRkkqkeqlRRQERKNR
  696-  767 (69.99/39.33)	DEFRKLMEGHVAagiLTAKTHWRDYCMQVKD.......LPPYKAVasnTSGSTPKDLFED.VAEELD..KQ.yhED.......KVQIKEA.
  768-  828 (48.19/24.92)	...IKI..QKIA...LASSW.......MFEDlkvaisaDDSLKGI...SEI.NMKLVFDE.LLERLR..EKeekEA.......K.KHQRLA
  829-  897 (83.43/48.22)	DNFSDLLYSIKE...ITASSGWEDCKSLFED.......TQEYRSI...GDENFVRGIFEEHVARLREklKE..kER.......KREEEKLR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     205.16|      38|      38|     216|     253|       2
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  141-  171 (42.23/17.74)	SSSYTFT.TSYGQPQHTFN.........T...PsqYQ...PASQMHA
  178-  222 (41.26/17.19)	GQPWSTHgTQNVPLVTHLVQAAAQSSAAAgtvP..TTnaqPSSAEQA
  223-  263 (63.45/29.77)	SSDWQVH.TSDDGKRYYYNKKTRQSSWEK...P..FElmtPVERADA
  264-  302 (58.22/26.81)	STDWKEF.STPDGRTYYYNKVTKVSKWII...P..EE..lKLAREQA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      82.90|      18|      39|      11|      28|       3
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   11-   28 (33.55/16.66)	QPLRPAVVRSAVPPQNFG
   31-   48 (26.36/11.53)	MPMQFGHVVPAQQTHQFI
  107-  122 (22.99/ 9.12)	QPNRPMTSGTLQPQQN..
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     101.68|      21|      25|     313|     333|       4
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  313-  331 (27.69/12.36)	.........ETGA.ASAVPAAPV.VSSGEI
  332-  358 (19.62/ 6.77)	PPatasvtpE..A.TYAVVSSPVsVSANAI
  360-  379 (27.47/12.20)	PP.........GVmASVSPSVAV.VPSAGI
  399-  418 (26.90/11.81)	.P.......VTPL.LAPVPANTV.VPTVAI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.10|      13|      32|      92|     104|       6
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   92-  104 (26.65/13.47)	PAAP....PSSQAVPMP
  123-  139 (23.45/10.98)	PQMPhnhlPNFGGVGMP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.11|      21|      26|     422|     442|       8
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  422-  442 (34.72/21.90)	LSNAKSNHDNSSLVNIASLPD
  449-  469 (34.39/21.63)	LEEAKKGMPVTGRSNAASLEE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16681 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MASNSQFSGVQPLRPAVVRSAVPPQNFGPPMPMQFGHVVPAQQTHQFIPAASQQFRPVGQGVHGTNIGMPSDQTQMPHFSQPAHHLPPRSGPAAPPSSQAVPMPYVQPNRPMTSGTLQPQQNPQMPHNHLPNFGGVGM
2) TTSYGQPQHTFNTPSQYQPASQMHAPVMPAVGQPWSTHGTQNVPLVTHLVQAAAQSSAAAGTVPTTNAQPSSAEQASSDWQ
1
147
138
227










Molecular Recognition Features






MoRF SequenceStartStop




NANANA