<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16680

Description U-box domain-containing protein 52 isoform X2
SequenceMSETTSEANREQMEADVQQLFIPFKGFCARKGVQMKEVVLEDVDVSKAIIDYITANHIHNIVVGNSNRNAITKKFRNPDVPTNLIKSVPEFCSVYVISKGKPVTVRSAKANPAPSHLRQPSNPGSLHYHPDHDDAVKTPFTRASYRGSLPPPGPSAVPERRSFEKNTDFMRAPAWPLSGARTAPVHTLLEFTEPSHRPPRPSSSSRESWAEDMDFHGSVASQSMDFSDSIDLSSNLSDSPRGPYSPNSSRDLEAEMRRLRLELKQTMDMYSNACKEAISAKQKAKELHQWKMEEVRKFEEARHAEEAALALAEMEKAKAKAALEAAEAAQRIAKLEAQKRLNAEMKAKHEAEEKMKVLDALAQNDVRYRKYSIEEIEIATDYFSENLKIGEGGYGPVYRASLDHTPVAIKVLRPDAAQGRRQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMDSGSLEDRLFRRGSTPPIPWSVRFKIAAEIATGLLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADSVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGVMLLQIITAKPPMGLSHHVDKSIERGTFQEMLDPTVPDWPVEEALGFAKLALKCVELRRKDRPDLGTVILPELNRLRNLGHAYEAASHGSAASFAGGSASLCNYTTPQAQARSTIDQEKVATASGVGTPWRSMMDTLES
Length712
PositionTail
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.464
Instability index45.10
Isoelectric point6.72
Molecular weight79176.09
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16680
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     227.76|      59|      69|     113|     181|       1
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  113-  177 (108.44/68.87)	APSH.LrqpsnpGSLHYHPDHDDAVKTPFTRASYRGSLPPPG.......PSAVPERRSFEKNTDFM...RAPAWPL
  183-  215 (48.82/21.58)	APVHtL....................LEFTEPSHR....PPR.......PSS.SSRESWAEDMDF...........
  396-  440 (32.40/ 7.77)	...............................PVYRASLDHTPvaikvlrPDAAQGRRQFQQEVEVLsciRHPNMVL
  449-  478 (38.10/13.63)	............GCLVYEYMDSGSLED...RLFRRGS.TPPI.......PWSV.......................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     136.29|      45|      72|     253|     300|       2
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  253-  300 (73.23/52.28)	EAEMRRLRLELKQTMDMYSNACKEaisAKQKAKELHQWKMEEVR..KF..EE
  327-  375 (63.06/38.06)	EAAQRIAKLEAQKRLNAEMKAKHE...AEEKMKVLDALAQNDVRyrKYsiEE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16680 with Med32 domain of Kingdom Viridiplantae
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