<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16678

Description pre-mRNA-processing protein 40A-like isoform X2
SequenceMASNSQFSGVQPLRPAVVRSAVPPQNFGPPMPMQFGHVVPAQQTHQFIPAASQQFRPVGQGVHGTNIGMPSDQTQMPHFSQPAHHLPPRSGPAAPPSSQAVPMPYVQPNRPMTSGTLQPQQNPQMPHNHLPNFGGVGMPLSSSYTPQHTFNTPSQYQPASQMHAPVMPAVGQPWSTHGTQNVPLVTHLVQAAAQSSAAAGTVPTTNAQPSSAEQASSDWQVHTSDDGKRYYYNKKTRQSSWEKPFELMTPVERADASTDWKEFSTPDGRTYYYNKVTKVSKWIIPEELKLAREQALRAAAAQPCTETGAASAVPAAPVVSSGEIPPATASVTPEATYAVVSSPVSVSANAIVPPGVMASVSPSVAVVPSAGIPSSSSLGILNTVGASNPQTPVTPLLAPVPANTVVPTVAIEAALSNAKSNHDNSSLVNIASLPDGASAQDLEEAKKGMPVTGRSNAASLEEKTIDEEPFVYANKQEAKNAFKTLLESANVESDMTWEQAMRVIISDKRYGALKTLGERKQAFHEYLGQRKKQEAEERRIKQKKAREDFTRMLEECTELTSSTRWSKAVTMFENDERFNAVERARDREDLFESYLLDLLKKERAKAAEEHKQNIMDYRAFLESCDFIKANSQWRKVQDRLEDDERCSRLEKIDRLEIFQEYIHNLEKEEEEQRKKQKEQLRRQERKNRDEFRKLMEGHVAAGILTAKTHWRDYCMQVKDLPPYKAVASNTSGSTPKDLFEDVAEELDKQYHEDKVQIKEAIKIQKIALASSWMFEDLKVAISADDSLKGISEINMKLVFDELLERLREKEEKEAKKHQRLADNFSDLLYSIKEITASSGWEDCKSLFEDTQEYRSIGDENFVRGIFEEHVARLREKLKEKERKREEEKAKKEKEREEKEKRKEKERKEKEERKEKEREREKDKGKDRSRKDEAGSENVDMMDSYGSKDRKREKDKERKQRKHHHSMADDVSSEKDEKEESKKSRRYSGDRKKSRKHSYSSDSDSDNRHKRHKKDRDGSHRNNGYEELEDGELGEDGEIFKNHVPGH
Length1046
PositionUnknown
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.978
Instability index54.20
Isoelectric point6.72
Molecular weight118211.65
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16678
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     430.85|      63|      65|     759|     821|       1
---------------------------------------------------------------------------
  480-  538 (50.06/29.73)	NAF.....KtlLESAN.............VESDM.......T.WEQaM...R..VIISDKryGALK...TLGE...RKQAF.HE.YLGQ.RKK.QEAEER......
  540-  614 (34.89/18.15)	..I.....K...QKKAredftrmleecteLTSSTrwskavtM.FEN.............D..ERFN...AVERArDREDLF.ESyLLDLLKKE.RAKAAEEHKQNI
  622-  679 (77.79/50.89)	ESC.....D..F..IK.............ANSQW..........RK.V...Q..DRLEDD..ERCS...RLEKI.DRLEIF.QE.YIHNL.EK.EEEEQRKKQKEQ
  701-  758 (48.00/28.15)	AGI.....L..TAK.................THW...rdycMqVKD.LppyK...AVASN..TS.....GSTP....KDLF.ED.VAEEL.DK.QYHEDKV..QIK
  759-  821 (96.96/65.53)	EAI.....K..IQKIA.............LASSW.......M.FED.L...K..VAISAD..DSLK...GISEI.NMKLVF.DE.LLERLREK.EEKEAKKHQRLA
  822-  889 (55.39/33.80)	DNFsdllyS..IKEIT.............ASSGW..edcksL.FED.T...QeyRSIGDE..NFVR...GI.........F.EE.HVARLREKlKEKERKREEEKA
  890-  921 (23.00/ 9.07)	.................................................................K...KEKER.EEKEKR.KE..KER.KEK.EERKEKEREREK
  922-  967 (44.75/25.67)	DKG.....K..................................................D..RSRKdeaGSENV.DMMDSYgSK.DRKREKDK.ERKQRKHHHSMA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     150.17|      39|      39|     209|     247|       2
---------------------------------------------------------------------------
  209-  247 (75.84/43.92)	PSSAEQASSDWQVHTSDDGKRYYYNKKTRQSSWEKPFEL
  250-  288 (74.32/42.90)	PVERADASTDWKEFSTPDGRTYYYNKVTKVSKWIIPEEL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     150.47|      22|      25|      70|      91|       3
---------------------------------------------------------------------------
   30-   52 (18.18/ 6.25)	P......MPmqfgH.VvpAQQTHQFIPAA..S
   70-   91 (46.25/28.78)	PSDQT.QMP....H.F..SQPAHHLPPRS..G
   96-  115 (32.04/17.38)	PSSQAvPMP......Y..VQPNR..PMTS..G
  119-  135 (33.67/18.68)	PQQNP.QMP....H........NHLPNFG..G
  139-  164 (20.33/ 7.98)	PLSSS.YTP...qHtF..NTPSQYQPASQmhA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     114.40|      21|      25|     306|     326|       4
---------------------------------------------------------------------------
  306-  324 (25.05/11.40)	.......ETGA.ASAVPAAPV.VSSGEI
  325-  351 (21.00/ 8.39)	PPatasvTPEA.TYAVVSSPVsVSANAI
  353-  372 (25.82/11.97)	PP.......GVmASVSPSVAV.VPSAGI
  392-  411 (24.10/10.69)	.P.....VTPL.LAPVPANTV.VPTVAI
  412-  433 (18.43/ 6.48)	EA....aLSNA.KSNHDNSSL.VNIASL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.08|      19|      27|     972|     998|       5
---------------------------------------------------------------------------
  972-  993 (22.44/13.79)	SEKDekEESKKsRRYSGDRKKS
 1000- 1018 (32.64/19.11)	SDSD..SDNRH.KRHKKDRDGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.24|      15|     105|     191|     205|       6
---------------------------------------------------------------------------
  169-  186 (20.90/10.52)	AVGQPWSTHGTqnVPlVT
  191-  205 (25.34/14.28)	AAAQSSAAAGT..VP.TT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16678 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LKEKERKREEEKAKKEKEREEKEKRKEKERKEKEERKEKEREREKDKGKDRSRKDEAGSENVDMMDSYGSKDRKREKDKERKQRKHHHSMADDVSSEKDEKEESKKSRRYSGDRKKSRKHSYSSDSDSDNRHKRHKKDRDGSHRNNGYEELEDGELGEDGEIFKNHVPGH
2) MASNSQFSGVQPLRPAVVRSAVPPQNFGPPMPMQFGHVVPAQQTHQFIPAASQQFRPVGQGVHGTNIGMPSDQTQMPHFSQPAHHLPPRSGPAAPPSSQAVPMPYVQPNRPMTSGTLQPQQNPQMPHNHLPNFGGVGMPLSSSYTPQHTFNTPSQYQPASQMHAPVMPAVGQPWSTHGTQNVPLVTHLVQAAAQSSAAAGTVPTTNAQPSSAEQASSDWQ
877
1
1046
220










Molecular Recognition Features






MoRF SequenceStartStop




1) EIFKN
2) GYEELEDG
3) HHSMADDV
4) HKRHKKDR
5) SKKSRRY
1037
1023
963
1008
980
1041
1030
970
1015
986