<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16677

Description mediator of RNA polymerase II transcription subunit 19a-like isoform X2
SequenceMDSESKKFGRGPRELTGAVDLINHYKLWAHHDFFCKRSLPLSISDTHYLHNVVGDTEIRKGDGMELDQLFQNAPYLRETTAHIRPFDLDILGQAFQLRETAPIDLPSAEKGVPTIYSKSKSESKDKERKHKKHKDKDKEKDKEHKKHKHRHKDRTKDKEKKKDKSGHHDSGGDHSKKHHEKKRKHDGNEDLSDAHKHKKK
Length200
PositionHead
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-1.558
Instability index42.38
Isoelectric point9.52
Molecular weight23350.94
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16677
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.18|      15|      15|     132|     146|       1
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  132-  146 (28.57/11.15)	KHKDKDKEKDKEHKK
  148-  162 (27.61/10.52)	KHRHKDRTKDKEKKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.53|      16|      19|     164|     182|       2
---------------------------------------------------------------------------
  164-  182 (26.15/15.22)	KsghHDSGGDHSKKHHEKK
  184-  199 (30.39/11.05)	K...HDGNEDLSDAHKHKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.53|      14|      19|      69|      87|       3
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   69-   87 (17.98/23.23)	LFQnAPYLRETTahirPFD
   91-  104 (25.55/14.16)	LGQ.AFQLRETA....PID
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16677 with Med19 domain of Kingdom Viridiplantae
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