<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16675

Description LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 33A-like
SequenceMAVAEEAAEGGGGDLERRVMEAVKASEERGDPPLARAVEVGRCVQEKGLGFPSPELGHVLVSNLCFSHNMPSLWKLLDQAMASRLIAPLHALALLTPRVIPNRRAEPEAYRLYLELLSRYALSPLSIEVGSCREKIIKSVDDALQLSHAYGVHQMDFGHMVVLSILSVITSLIDCTLEDCGLQLTFRYKHGDFYADEGHQVMDIDVRGSSDEKRNKHREQLRRTNVLLAIEVVEKITSNKRAKLFLRLIYLNMPEKFNGLLERLQFIESHKSASQALLSANHILDSLSANVQKAMDWEYQLNKHQLLGVMVDAGPSSYLSCNSSGASRAACWISFDMFMENAMDGRQLHTVSAIEILTELTKSLKVINQASWQETFQALWISSLRLIQRDREPLEGPIPHLDARLCMLLSIVPLSIVPLVKEEYEMPSLISKGITRSYGNGAEENNIASRKHGLVSSLQVLXLFSGLLLPPPSVVNAANSAASKAAAFVSNLKTGCVGNMLHLIVEACIARNLIDTSAYFWPGYVVPSAPSKDSLLVQESPWTTFMEGAPLNGSLKNALMVTPATSVVELEKLYNIALNGSEEEKSAAAKILCGASLVRGWNIQEHVVHIVIKLLSPSVPPNPSVSGSGSHLIGHMPMLSAILFGVSCGDIVHILSLFGMIPEVAAALMPLCEAFGSLPPPPNHRSSMSDETSVYAVFSCAFLFLLRLWKFYKPPQEHCMAGRGGPVRSELTLDCLLLMRNSRIALQNSSAVGRMDGITDPRHSTPSQPVYIDSFPKLRAWYFQNQACIASTLSGLCNKNPVHQVANKILKMIYRKMTKAGTVSGNPSSTSSNTISGSPVNTTEDAHQRPTFPAWEFLEAVPFVLEAVLTACAHGRLSSRDLTTGLRDLVDFLPASLATIISYFSAEITRGIWKPVQMNGTDWPSPAGNLLSVESEIKEILASAGIHIASCYPRGMPPMLPLPMAALVSLTITFKLDKSLEYTHSILGQALENCATGSSWPSMPIIGALWTQKVRRWHDFIVLSCSRSPFTRDKDAVAQLIRSCFSSFLGPSITEGSHFSANRGIHGLLGQAMADQGLRLPIAPGFLYLRTCRTFHDTNFVTEVILKLVLELANKLGNEWACSGPARLRSGRLSLAAAVSRVQEVAMLGATLLCIAGGVLLVQVLYEESLPTLLLSAGEEKLVGAGPASNILEGYVMAYMLILSGAFVWGIGNTSPAYTSVYSSRRARVIGIHMDFVAAVMEGNISVGCDPATWKAYVSCFVGLLVSFVPTWVPEVKQGTLHKLASGLRGWHEYDLALSLLERGGPAAMDALVESVL
Length1317
PositionTail
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy0.136
Instability index50.55
Isoelectric point6.76
Molecular weight143370.42
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16675
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.71|      37|     148|     463|     545|       1
---------------------------------------------------------------------------
  308-  349 (59.63/16.81)	GVMVDagPSSYLSCNSSGASRAACWISfdmFMENAMDGRQLH
  466-  502 (64.08/85.77)	GLLLP..PPSVVNAANSAASKAAAFVS...NLKTGCVGNMLH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.84|      22|      75|     905|     926|       2
---------------------------------------------------------------------------
  905-  926 (45.50/25.14)	SAEITRGIWKPVQMN...GTDWPS.P
  979- 1004 (32.34/15.84)	SLEYTHSILGQALENcatGSSWPSmP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     179.67|      57|     542|      94|     151|       4
---------------------------------------------------------------------------
   94-  151 (93.76/58.66)	LLTPRVIPNRRAEPEAYRL..YLELLSR..YALSPLSI.EVGSCrEKIIKSVDDAL.QLSHAYG
  614-  676 (85.91/49.32)	LLSPSVPPNPSVSGSGSHLigHMPMLSAilFGVSCGDIvHILSL.FGMIPEVAAALmPLCEAFG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.56|      22|     117|     942|     965|       5
---------------------------------------------------------------------------
  942-  965 (40.38/35.39)	ASAGIHiaSCYPRGMPPM.LPLPMA
 1061- 1083 (35.18/23.31)	ANRGIH..GLLGQAMADQgLRLPIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     155.06|      40|     687|     509|     548|       9
---------------------------------------------------------------------------
  509-  548 (72.02/43.28)	IARNLIDTSAYFW......PGYV.VPSAPSKDSLLVQESPWTTFMEG
 1171- 1194 (26.13/10.99)	...................PTLL.LSAGEEK...LVGAGPASNILEG
 1197- 1243 (56.91/32.65)	MAYMLILSGAFVWgigntsPAYTsVYSSRRARVIGIHMDFVAAVMEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.54|      19|     579|     706|     726|      10
---------------------------------------------------------------------------
  706-  726 (35.87/30.55)	LRLWKFYkpPQEHCMAGRGGP
 1288- 1306 (36.67/23.46)	LRGWHEY..DLALSLLERGGP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16675 with Med33 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




1) APAPA
2) GIPPISAVRLEQMS
86
97
90
110