<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16675

Description LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 33A-like
SequenceMAVAEEAAEGGGGDLERRVMEAVKASEERGDPPLARAVEVGRCVQEKGLGFPSPELGHVLVSNLCFSHNMPSLWKLLDQAMASRLIAPLHALALLTPRVIPNRRAEPEAYRLYLELLSRYALSPLSIEVGSCREKIIKSVDDALQLSHAYGVHQMDFGHMVVLSILSVITSLIDCTLEDCGLQLTFRYKHGDFYADEGHQVMDIDVRGSSDEKRNKHREQLRRTNVLLAIEVVEKITSNKRAKLFLRLIYLNMPEKFNGLLERLQFIESHKSASQALLSANHILDSLSANVQKAMDWEYQLNKHQLLGVMVDAGPSSYLSCNSSGASRAACWISFDMFMENAMDGRQLHTVSAIEILTELTKSLKVINQASWQETFQALWISSLRLIQRDREPLEGPIPHLDARLCMLLSIVPLSIVPLVKEEYEMPSLISKGITRSYGNGAEENNIASRKHGLVSSLQVLXLFSGLLLPPPSVVNAANSAASKAAAFVSNLKTGCVGNMLHLIVEACIARNLIDTSAYFWPGYVVPSAPSKDSLLVQESPWTTFMEGAPLNGSLKNALMVTPATSVVELEKLYNIALNGSEEEKSAAAKILCGASLVRGWNIQEHVVHIVIKLLSPSVPPNPSVSGSGSHLIGHMPMLSAILFGVSCGDIVHILSLFGMIPEVAAALMPLCEAFGSLPPPPNHRSSMSDETSVYAVFSCAFLFLLRLWKFYKPPQEHCMAGRGGPVRSELTLDCLLLMRNSRIALQNSSAVGRMDGITDPRHSTPSQPVYIDSFPKLRAWYFQNQACIASTLSGLCNKNPVHQVANKILKMIYRKMTKAGTVSGNPSSTSSNTISGSPVNTTEDAHQRPTFPAWEFLEAVPFVLEAVLTACAHGRLSSRDLTTGLRDLVDFLPASLATIISYFSAEITRGIWKPVQMNGTDWPSPAGNLLSVESEIKEILASAGIHIASCYPRGMPPMLPLPMAALVSLTITFKLDKSLEYTHSILGQALENCATGSSWPSMPIIGALWTQKVRRWHDFIVLSCSRSPFTRDKDAVAQLIRSCFSSFLGPSITEGSHFSANRGIHGLLGQAMADQGLRLPIAPGFLYLRTCRTFHDTNFVTEVILKLVLELANKLGNEWACSGPARLRSGRLSLAAAVSRVQEVAMLGATLLCIAGGVLLVQVLYEESLPTLLLSAGEEKLVGAGPASNILEGYVMAYMLILSGAFVWGIGNTSPAYTSVYSSRRARVIGIHMDFVAAVMEGNISVGCDPATWKAYVSCFVGLLVSFVPTWVPEVKQGTLHKLASGLRGWHEYDLALSLLERGGPAAMDALVESVL
Length1317
PositionTail
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy0.136
Instability index50.55
Isoelectric point6.76
Molecular weight143370.42
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16675
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.71|      37|     148|     463|     545|       1
---------------------------------------------------------------------------
  308-  349 (59.63/16.81)	GVMVDagPSSYLSCNSSGASRAACWISfdmFMENAMDGRQLH
  466-  502 (64.08/85.77)	GLLLP..PPSVVNAANSAASKAAAFVS...NLKTGCVGNMLH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.84|      22|      75|     905|     926|       2
---------------------------------------------------------------------------
  905-  926 (45.50/25.14)	SAEITRGIWKPVQMN...GTDWPS.P
  979- 1004 (32.34/15.84)	SLEYTHSILGQALENcatGSSWPSmP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     179.67|      57|     542|      94|     151|       4
---------------------------------------------------------------------------
   94-  151 (93.76/58.66)	LLTPRVIPNRRAEPEAYRL..YLELLSR..YALSPLSI.EVGSCrEKIIKSVDDAL.QLSHAYG
  614-  676 (85.91/49.32)	LLSPSVPPNPSVSGSGSHLigHMPMLSAilFGVSCGDIvHILSL.FGMIPEVAAALmPLCEAFG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.56|      22|     117|     942|     965|       5
---------------------------------------------------------------------------
  942-  965 (40.38/35.39)	ASAGIHiaSCYPRGMPPM.LPLPMA
 1061- 1083 (35.18/23.31)	ANRGIH..GLLGQAMADQgLRLPIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     155.06|      40|     687|     509|     548|       9
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  509-  548 (72.02/43.28)	IARNLIDTSAYFW......PGYV.VPSAPSKDSLLVQESPWTTFMEG
 1171- 1194 (26.13/10.99)	...................PTLL.LSAGEEK...LVGAGPASNILEG
 1197- 1243 (56.91/32.65)	MAYMLILSGAFVWgigntsPAYTsVYSSRRARVIGIHMDFVAAVMEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.54|      19|     579|     706|     726|      10
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  706-  726 (35.87/30.55)	LRLWKFYkpPQEHCMAGRGGP
 1288- 1306 (36.67/23.46)	LRGWHEY..DLALSLLERGGP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16675 with Med33 domain of Kingdom Viridiplantae
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