<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16673

Description U-box domain-containing protein 33-like
SequenceMALVSSSVPVFLQQQQQMERRGYRRTASVPSSGGWRSRLMEIVEEPAVEEAAAEEEEKVYIAVGKEGKEGKANLNWVLENISRKKIKIVIVHIHRPAQKIPMMGGWFAVNQLTAREVNAYWQVEREKLDKYLDEYIVMCARSKVRAEKLVIESDDIGKGLVELIAQHGITQLVMGAKKRKLVMGAAADKHYSRKMKELRSNTALSVQQQADPSCKIWFVCRGNLICIREGSQYADFNSQGEAMPLALPHEDLGRISSPGRIRRSVSDPWEGISKSSRCSDQSEEGPSNVVLVPAHKDEGREEGSSNLPSVHESKENHGFASLHHDLDDDGIDDDVYEKLQLALVEAETLKREAYEESCRRQKAERDLYQATRKVRAAENSYTKEMKQRKETEERLARERTELEKLRKQRDDDFEEFQKLCQQRMELELQIADSGRIVKDFEEKLSEAQHLLNSLRLEHEKLRGERDNAVREAEEQNQKKVEVTDGTHGTAIFSEFSYVELKQATMDFDDSLKIGEGGYGSVYKGFLRHTTVAIKMLNPQSRQGQSEFHHEVEVLSRVRHPNLVTLIGACPEAWALIYEFLPNGSLEDRLACRNDTPPLSWRTRTRIAAEIRSALLFLHSKKPHSVVHGDLKPANILLDASFTCKLGDFGICRFLVQSNTTATPYCRTSPKGTFAFMDPEFLTSGELTPHSDVFSFGVTILRLLTGKPALGIIGKVRDALEKERLDEIVDASAGGWPYVQAKKLAQLGLKCCEVERKRRPDLAGEAWRVLEPMTKAAASSMASSRSSVMLKASEDCIPSYFICPILKEIMKDPHIAADGFTYEAEAIKGWLDSGHDTSPMTNLKLPHCELVPNDNLRSMIEQWLQQ
Length865
PositionTail
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.533
Instability index44.75
Isoelectric point6.24
Molecular weight97737.04
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16673
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.55|      11|      15|     283|     295|       1
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  283-  295 (17.29/17.09)	EEGPSNvvLVPAH
  301-  311 (21.26/13.34)	EEGSSN..LPSVH
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     167.95|      43|      53|     383|     425|       2
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  347-  373 (34.24/16.48)	...........ETLKREAYE.ESCRRQKAE.....RDLYQATRK
  383-  425 (72.00/42.31)	KEMKQR.KETEERLARERTELEKLRKQRDDDFEEFQKLCQQRME
  438-  481 (61.70/35.27)	KDFEEKlSEAQHLLNSLRLEHEKLRGERDNAVREAEEQNQKKVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     226.64|      76|     165|     554|     643|       3
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  554-  643 (109.94/113.69)	LSRVRhpnLVTLIGACPEAWAliyeFLPNGSLED.RLAC....RNDTPPL...SWRTRTRIAAEIRSALlflhSKKPHSVVhgdLKPANILLDASFTC
  719-  802 (116.70/80.44)	LEKER...LDEIVDASAGGWP....YVQAKKLAQlGLKCceveRKRRPDLageAWRVLEPMTKAAASSM....ASSRSSVM...LKASEDCIPSYFIC
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.18|      13|      70|      23|      35|       4
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   23-   35 (25.85/16.33)	YRRTASVPSSGGW
   94-  106 (28.33/18.57)	HRPAQKIPMMGGW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16673 with Med32 domain of Kingdom Viridiplantae
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