<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16668

Description heat shock cognate 70 kDa protein 2-like
SequenceMAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDACVQSDVKLWPFKVVAGPGDKPMIVVQYKGEEKQFAAEEISSMVLMKMKEIAEAYLGSTVKNGVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKAGSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSIHDVVLVGGSTRIPRVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEDIEKMVQDAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDDKIASKLPAADKKKIEDAIEQAIQWLDGNQLAEADEFEDKMKELEGTCNPIIAKMYQGAGAGMAGGMGDDSPSGGDSGAGPKIEEVD
Length648
PositionUnknown
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.415
Instability index35.60
Isoelectric point5.20
Molecular weight70921.59
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16668
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      87.28|      20|      21|      36|      55|       1
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   16-   31 (22.01/12.50)	....TTYSCVGVWQHDRVEI
   36-   55 (34.91/23.84)	QGNRTTPSYVAFTDTERLIG
   60-   78 (30.35/19.83)	NQVAMNPINTVF.DAKRLIG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     465.62|     156|     189|     170|     335|       2
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  170-  335 (237.84/193.36)	GLNVMRIINePTaAAIAYGLDKKAGSV.GEKNVLIFDLggGTFDVSLLT..IEE..GIFEV...KATAGDTHlGGEDFDNRMVNH...FVQEFKRKHKKDISGNprALRRLRTS.CERAKRtlsSTAQTTIEIDSLYEGIDFYSTITRARFEE....LNMDLFRKCMEPVEKCLRDAKMDKS
  362-  533 (227.77/153.37)	GKELCKNIN.PD.EAVAYGAAVQAAILsGEGNEKVQDL..LLLDVTPLSlgLETagGVMTVlipRNTTIPTK.KEQVFSTYSDNQpgvLIQVYEGERTRTRDNN..LLGKFELSgIPPAPR...GVPQITVCFDIDANGILNVSAEDKTTGQKnkitITNDKGRLSKEDIEKMVQDAEKYKS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16668 with Med37 domain of Kingdom Viridiplantae
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