<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16667

Description probable mediator of RNA polymerase II transcription subunit 37c
SequenceMAKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPSVQADRKLWPFKVIAGPGDKPMIVVQYKGEEKQFSPEEISSMVLTKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKVSSSGEKNVLIFDLGGGTFDVSILTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFRRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYATITRARFEELCMDLFRKCMEPVEKCLRDAKMDKSRVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNQKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVVIQVYEGERTRTKDNNLLGKFELSGIPPAPRGVPQINVCFDMDANGILNVTAEDKTTGHKNKITITNDKGRLSKEEIEKMVREAEKYKAEDEEHKKKVEAKNALENYAYNMRNTIKDDKIASKLPPADKKKIEDAIEQTIRWLDGNQLAEADEFEDKMKELESLCNPIIARMYQGGGAGMAGGMDEDSPSGGAGGAGPKIEEVD
Length647
PositionUnknown
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.444
Instability index38.73
Isoelectric point5.51
Molecular weight71176.06
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16667
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.54|      18|      41|     336|     355|       1
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  336-  355 (25.58/20.08)	VHDVVLVGGSTRipKVQQLL
  380-  397 (29.97/16.52)	VQAAILSGEGNQ..KVQDLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.65|      17|     187|     169|     187|       2
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  169-  187 (22.56/20.68)	GLNVMRIINePTaAAIAYG
  361-  377 (32.09/18.81)	GKELCKSIN.PD.EAVAYG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.27|      18|      21|      37|      54|       3
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   15-   32 (19.08/ 9.45)	....TTYSCVGVWQHDRveIIA
   37-   54 (32.67/20.82)	NR..TTPSYVAFTDTER..LIG
   59-   77 (24.52/14.01)	NQvaMNPTNTVF.DAKR..LIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.16|      18|      18|     111|     128|       4
---------------------------------------------------------------------------
  111-  128 (29.02/16.60)	KGEEKQFSPEEISSMVLT
  131-  148 (27.14/15.12)	KEIAEAYLGTTIKNAVVT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16667 with Med37 domain of Kingdom Viridiplantae
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