<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16665

Description mediator of RNA polymerase II transcription subunit 12-like
SequenceMQRFSAASCGAGVSNSAIGGASARENARAESSFSPSNFSLNPRRQPQLSPYKLKCDKESLNSRLGPPDFYPQIPNCPEETLTREYLQSGYKETVEGIEEAREITLGQIPNFLKPEFIVKCKEAIRKRLRAINESRAQKRKAGQVYGVPLSGPLLIKPGLFPEQWHCSGDFRRKWIEVLSQHHKRLHSLAEHVPHGYRRKSLFEVLIRHNVPFLRATWFIKVTYLNQVRPASTSVSSGPSDKTQLSCTDLWTKDVTDYLQQLLDEFFSKDGSFAPILSRDQSSQGLIAGPGPAQHKSDSVLATPDAEEPSLPFKWWYMVQLLRWHYAEGLLHPSPVIEWVLNQLQEKDSAEALELLLPVVFDLMESIVLSQTNVRMLADIAVRSINDLSSSDLSSVDDLKKSSPTSALVGILQYMILSVPDTFVALDCFPLPSCVAPDLNCRNTVLKVPEGVDGVHFDTRDAYLQYLSCGYTVSSIQKRACNLAKIVNPSLQGHGAAKVVQALDKALITGDLKFAYNSLFEDLSDIAIEEQWIAEVSPCLRSSLKWIGTVRLPLICCVFFLCEWATCDYRDCRTSLPQNHKSTGRKDFSQVYLALLLLKFKIEDMCSSSQSKSGSTLLFSTSGKAASVRDTSLGGTLVEQVSAMNNMKSSSNRKHKMDIFQSPGPLHDIIVCWIDQHEVGSAGGFKHVEVFIMELIRNGIFYPQAYVRQLIVSGIMDRNVTAVDLERQRRHQKILKQLPGSCLFDVLEEAKVVEAPLLDETVSVYSNERRLMLHGLLNGESNHMSTKGDSYQSFALQKHRDHSAAVRGGKHVKMKDEAAELKILISTLLHFPYPYSMQVGTCPDESQGSFRRPLGSFDIKVDLTEGTPGCEECRRAKRQKLGDERVSPLQGFSSNQSDDEDSWWVRKGPKSQESFKVEPPLKATKHPSRGRQKTVRKTQSLAQLAAARIESSQGASTSHVCDNKVSCPHHKSVSESEVPKDADLMKATHLSDIGKAIKQLRWLEKRSISIWLLKAMKQLVEENEKATSKVSNCTGVFSAPADDGISVRWTIGEDELLSILYILDTASDLVSVVKLLLWLLQKTLGGPSTAVHVGRSITVPKNRENQVCKVGESFLLSSLQRYENVLLATDLLPEVLTTLMHRTVAFVTPNGKSFGSTAFAYARNLLKKYRDVASVTKWEKTFRATCDQRLLAELDAGRPLDGDLVFSSGVPAGVEDTDEYIRQKMTGRLSRTSPNLKEMVQRHVEEAVHYFYGKERKLFSVNNPKGSSLENWEDSNQIAQDIVLGLLDCIRQNGGATLEGDPSIVASAVSAIVGSVGPAISKLPDFTSGNYQSFLSTTNSLNCVRHILQIHITSLCLLKESLGERMSRIFEIALAAEASSSISGAFAPGKTYRSQFQPSSETHDMYGNHSNELVNNSVKLFVGRAAKAAAAVSALVIGAIVHGATSLERMVTAFKLKEGLDILQFIRSARSSSNGMSRSVGSFKLDHCIEVYIHWFRLLVGNCRTVFDGLVAEILGESYIIALSRMQRMLPLNLVFPPAYSIFGMVIWRPYILNINIAAREDVQLYQNLFVAIGDAIRHQPFRELCFRNTRVLYDLLATDVGDSEFAAMLELHSSDKHLKTRAFVPLRSRLFLNALIDCKMPAFTIMQEDGSWISGPNEQRAFAENEAKLQDQLVHVLDNLQPAKFHWQWVVLRLLLNEQALIEKTETQNMSLVEAIRSLSPNTGNVLSESEKKFTEIILTRILVRPDAAPLYSEVVHLLGNLQQESLVMDIKWILAGQDVLLGRKSIRQQLLQVAQRKGLSTKSQFWKPWGWSSSIADGVANRGDKRKLEAISIEEGELVDECIDVKKPGKMNIHNIDAEGFTSTQQYITEKALAELTLPCIDRSSSDIRNLFAAELVKQMGAIDQQINTITRGGNKQASAASSGTEGSSNKSSIRKGMRGGSPVLGRRSTGVSDSTPPSATALKASLWLRLQFLLRLLPIIYTDREPSARNMRQMLASIILRLLGARVVHEDADLYLPMHRVPSQKDAESLVEGSVAASLDYSSDSLFDRLLCILHGLLSNCKPSWLKPKSVSKSTVKSPRDFSAFDRETAESLQADLDRMELPATIRRRIQAAMPILPASLPFLIPCHSPTSSSLELASLQPITSTPGTHQRFLPTTRTSTNLSGRSKTVPSQYLDMEIDPWTLLEDGTGSASASGGNSHMIGVGGDHSNLKACSWLKGAVRVRRTDLTYVGSLDDDS
Length2240
PositionKinase
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.224
Instability index50.00
Isoelectric point8.43
Molecular weight248512.34
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16665
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     132.67|      42|     371|      84|     128|       1
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   84-  128 (64.69/54.58)	EYLQSGYkeTVEGIEEaREITLGQIPN.FLKPEFIVKCKEAIRKRL
  464-  506 (67.98/46.14)	QYLSCGY..TVSSIQK.RACNLAKIVNpSLQGHGAAKVVQALDKAL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.45|      36|     371|     644|     680|       2
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  644-  680 (63.69/43.79)	NNMKSSSNRKHKMDIFQSPGPlHDIIVCW.IDQHEVGS
 1021- 1057 (57.76/35.00)	ENEKATSKVSNCTGVFSAPAD.DGISVRWtIGEDELLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     152.90|      50|      83|    1667|    1720|       3
---------------------------------------------------------------------------
 1667- 1720 (79.48/69.93)	AKLQDQLVHVLDNLQPAKF..HWQWVvlrlLLNEQALI.EKTETQNMSLVEAIRSLS
 1749- 1801 (73.42/54.36)	APLYSEVVHLLGNLQQESLvmDIKWI....LAGQDVLLgRKSIRQQLLQVAQRKGLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.09|      27|      83|    1495|    1522|       4
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 1495- 1522 (42.60/32.61)	FR.LLVGNCRTVFDgLVAEILGESYIIAL
 1581- 1608 (44.49/28.74)	FReLCFRNTRVLYD.LLATDVGDSEFAAM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.35|      40|      96|    1173|    1213|       5
---------------------------------------------------------------------------
 1173- 1213 (66.80/42.84)	SVTKWEKTFRATCDQrLLAELD.....AGRPLDGD.LVFSSGVPAGV
 1267- 1312 (56.54/31.47)	SLENWEDSNQIAQDI.VLGLLDcirqnGGATLEGDpSIVASAVSAIV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     280.48|      84|      95|     177|     266|       6
---------------------------------------------------------------------------
  177-  266 (136.96/94.52)	VLSQHHKRLHSLAEHVPHGYRRKSlfeVLIRHNV..PFLRATWFIKVTYLnqvRPASTSVSSGPSDKTQLSCTDLWTKDVTDYLQQLLDEFF
  275-  360 (143.52/85.09)	ILSRDQSSQGLIAGPGPAQHKSDS...VLATPDAeePSLPFKWWYMVQLL...RWHYAEGLLHPSPVIEWVLNQLQEKDSAEALELLLPVVF
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     300.01|      96|    1527|     507|     612|       7
---------------------------------------------------------------------------
  507-  612 (148.29/117.68)	ITGDLKFAYNSLFEDLsdIAIEEQWIAEVSPC.LRSSLKWIGTVRLPLICCVfFLCEWATCDYRDC.RTSLPqnhkSTGRKDFsQVYLALL..LLKFKIEdmCSSSQSKS
 2037- 2136 (151.72/91.29)	VAASLDYSSDSLFDRL..LCILHGLLSNCKPSwLKPKSVSKSTVKSPRDFSA.FDRETAESLQADLdRMELP....ATIRRRI.QAAMPILpaSLPFLIP..CHSPTSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.56|      11|     274|    1376|    1386|      11
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 1376- 1386 (20.33/11.34)	EASSSISG.....AFA
 1648- 1663 (17.23/ 8.36)	EDGSWISGpneqrAFA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16665 with Med12 domain of Kingdom Viridiplantae
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