<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16662

Description U-box domain-containing protein 52-like isoform X1
SequenceMEIQEVKESEISLPPSFLVVAVAVNGSKSSKYAVRWALEKFVPEGRNFFRLLHVRPPIKMVPTPMGNYIPISDVREDVAAAYKKEIEWQTNSMLLLYKQMCAQRRVEAESVVIEADNVAEAISGEIAKFSISKLVIGSSSRNVFTRKIGSNKMSSRISSCIPGFCTVYVVLKGKLLSVRASTTVVDDMTNEENISSTSRSFSSLSSSARSEWTDTDITSSSLHHASLPIQRNQALANINSNFVNMGASPSDTLHTRSISLFTDDDFISSSSIVTETQCDNSMVSSYRSFQTDNQLHSPDQASTSEVRTDSSVPGNQVDVSFELEKLRVELRHFQKLCVVARSESNDASQQLHELTARRMEEEIKLKEIELREQMVRELARQEREKRETAERESKFIKECAEREVLHRKDSENNAAREANEKQRLEKALACNDEPYKKYTWEEIESATSSFSDCLTIGRGANGIVYKGSFHHTTAAVKVLHSNEGHGTTQFKQELEILSKIHHPHLLLLLGACTERGCLVYEYMENGSLDDRLQCKDNTAPLPWFHRYRIAWEVASALAFLHNSKPEPIIHRDLKPANILLDRNFVSKIGDVGLSTLLPAVNLPMCTMIKDTTPVGTMFYIDPEYQRTGLVSAKSDIYALGMVILQLLTAKPPMGLTLIVERALEEGNLMEVLDPGAGQWPLEETQELALLGLGCAELRRKDRPALKEQVLPLLEKLKVIADKAHVCASHTPSAPPNHFICPILQEVMNDPCVASDGYTYDRKAIEIWLGMNDKSPMTNLQLPNKNLIPNHSLRSAIMDWKSRSQ
Length804
PositionTail
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.341
Instability index46.68
Isoelectric point6.05
Molecular weight90141.71
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16662
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.27|      48|     351|       1|      53|       1
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    1-   53 (63.35/53.05)	MEiQEVKESEISLPPSfLVVAVAVNGSKSSKYAVRWAleKFVPEGRNfFRLLH
  359-  406 (78.93/45.24)	ME.EEIKLKEIELREQ.MVRELARQEREKRETAERES..KFIKECAE.REVLH
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.72|      44|     592|      55|     105|       2
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   55-  105 (65.80/61.73)	RPPIKM...VPTPM..GNYIPISDvredvAAAYKKEIEwQTNSMLLLyKQMCAQ.RR
  650-  699 (64.92/39.78)	KPPMGLtliVERALeeGNLMEVLD.....PGAGQWPLE.ETQELALL.GLGCAElRR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.61|      12|      48|     210|     221|       3
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  210-  221 (23.28/14.24)	SEWTDTDITSSS
  259-  270 (22.33/13.39)	SLFTDDDFISSS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.82|      24|     438|     141|     166|       4
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  141-  166 (37.35/32.72)	RNvFTRKIGSNKMSSRISSC.IPgFCT
  582-  606 (39.46/24.47)	RN.FVSKIGDVGLSTLLPAVnLP.MCT
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     129.30|      39|     168|     530|     570|       7
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  530-  570 (68.04/50.00)	DRLQCKDNTapLPWFHRYRIAWEVASALAFLHNSKPE.....PIIH
  701-  744 (61.27/38.34)	DRPALKEQV..LPLLEKLKVIADKAHVCASHTPSAPPnhficPILQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16662 with Med32 domain of Kingdom Viridiplantae
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