<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16659

Description pre-mRNA-processing protein 40A-like isoform X1
SequenceMAGNPQSSGAQPLRPAVVGSTGPPQNFGPPMSMQFRPVVPAQQTHQFIPAASQQFRPVGQGVPGSNIGISSGQTQMHHFPQPAQHLPRSGPPAPPSSQAIPMPYGQPSRPMTSGSLQPQQNPQMQNSHLPNLGGIGMPLSSSYTFATSYCQPPNTLNNPSQYQPASQMQAPITPAMGQPWSAPGTQNVPLVTPLVQAAPQSSATGAAVGTAATTNAQPRSSEQVSSDWQEHTSVDGKRYYYNKKTRQSSWEKPLELMTPIERADASTDWKEFSTSDGRTYYYNKVTKISKWIIPDELKLAREQALRAAAQQAHTETGTASVAPVAPTVSSGEIPSATTDSVTPGTTSAVVSSSVPVAVNSITPPAVMASVSPSVVPSAGISSSSSLGIPNTIGSSNLQTTVTPLPAPVSANTVVSTVAIESASSNTKSNHDSSSLLNTASVPDGASAQDLEEAKKAMPVTGRVNVTPLEEKTIDEEPLVYSNKQEAKAAFKALLESANVESDWTWEQAMRVIINDKRYGALKTLGERKQAFNEYLGQRKKQEAEERRIKQKKAREDFTRMLEECKELTSSTRWSKAVTMFENDERFHAVERARDREDLFESYLVDLQKKERAKAAEEHKRNIMEYRTFLESCDFIKANTQWRKVQDRLEDDERCSRLEKIDRLEIFQEYIHDLEKEEEEQRKIQKEQLRRLERKNRDEFRKLMEEHVAAGILTAKTHWRDYCMQVKDLPPYIAVSSNTSGSTPKDLFEDVAEELDKQYHEDKAQIKEAIKIRKIALASSWTFEDFKAATSGDDSLQGISETNMKLVFDELLERLREKEEKEAKKRQRLADNFSDLLYSIKEITASARWEDCKSLFEDTQEYRSIGDENFVKEIFEEHVAHLQEKLKEKERKREEEKAKKEKEREEKEKRKEKERKEKEERKEKEREREKEKGKDRSRKDEAESENVDMMDSHGSKDKKRENDKERKHRKRHHSMVDDVSSEKDDKEESKKSRRRRHSGDRKKSRKHTYTTDSDSENRHKRHKKDRDGSRRNGGYEELEDGELGEDGEIHAV
Length1051
PositionUnknown
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-1.030
Instability index54.32
Isoelectric point6.64
Molecular weight118731.77
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16659
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     187.28|      22|      22|     886|     907|       1
---------------------------------------------------------------------------
  886-  907 (33.37/16.71)	KEKERKREEEKAKKEKEREEKE
  910-  930 (31.61/15.41)	KEKERKEKEERKEKERER.EKE
  931-  952 (28.95/13.44)	KGKDRSRKDEAESENVDMMDSH
  953-  974 (33.56/16.85)	GSKDKKRENDKERKHRKRHHSM
  980- 1001 (29.91/14.15)	SEKDDKEESKKSRRRRHSGDRK
 1017- 1038 (29.89/14.14)	RHKRHKKDRDGSRRNGGYEELE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     168.08|      39|      40|     225|     263|       2
---------------------------------------------------------------------------
  153-  184 (37.42/18.06)	...PNTLNNPSQYQPASQMQAPITPA..........................mGQPW....SAPG.
  185-  237 (22.95/ 8.23)	.......TQN......VPLVTPLVQAapqssatgaavgtaattnaqprsseqvSSDWQEHTSVDGK
  238-  278 (64.25/36.27)	RYYYNKKTRQSSWEKPLELMTPIERA.........................daSTDWKEFSTSDGR
  279-  314 (43.47/22.17)	TYYYNKVTKISKWIIPDELKLAREQA.........................lrAAAQQAHT.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.83|      14|      17|      25|      38|       3
---------------------------------------------------------------------------
   25-   38 (30.01/16.13)	QNFGPPMSMQFRPV
   45-   58 (21.83/ 9.77)	HQFIPAASQQFRPV
  120-  131 (20.98/ 9.11)	QN..PQMQNSHLPN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     105.51|      17|      17|     340|     356|       4
---------------------------------------------------------------------------
  320-  334 (16.97/ 7.78)	....SVAP.....VAPTVSSGE......IP
  340-  355 (23.41/14.10)	....SVTP....GTTSAVVSSS......VP
  356-  376 (16.64/ 7.46)	VavnSITP....PAVMASVSPS.....vVP
  386-  398 (15.92/ 6.75)	L...GIP........NTIGSSN......LQ
  399-  419 (15.50/ 6.34)	T...TVTPlpapVSANTVVSTV......AI
  420-  442 (17.08/ 7.89)	E...SASS....NTKSNHDSSSllntasVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      56.09|      17|      17|     667|     683|       5
---------------------------------------------------------------------------
  594-  610 (20.00/ 9.61)	DREDLF.ESYLVDLQK....KE
  639-  659 (17.44/ 7.44)	TQWRKV.QDRLEDDERcsrlEK
  660-  677 (18.65/ 8.47)	IDRLEIfQEYIHDLEK....EE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     178.57|      47|      65|     771|     817|       6
---------------------------------------------------------------------------
  501-  539 (47.02/31.82)	.............................SDWTWEQAMRVIINDKRYgalKTLGER...KQAFNEYLGQ.RK
  770-  816 (74.15/55.02)	K.....................IRKIALASSWTFEDFKAATSGDDSL...QGISETN.MKLVFDELLERLRE
  817-  883 (57.41/40.70)	KeekeakkrqrladnfsdllysIKEITASARW..EDCKSLFEDTQEY...RSIGDENfVKEIFEEHVAHLQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.37|      18|      65|       7|      24|       7
---------------------------------------------------------------------------
    5-   23 (32.20/14.79)	PqSSGA......QPLRPAVVGSTGP
   95-  118 (29.17/12.77)	P.SSQAipmpygQPSRPMTSGSLQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.69|      10|      17|     678|     687|      10
---------------------------------------------------------------------------
  678-  687 (16.69/10.00)	EEQRKIQKEQ
  697-  706 (18.00/11.38)	DEFRKLMEEH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16659 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ATSYCQPPNTLNNPSQYQPASQMQAPITPAMGQPWSAPGTQNVPLVTPLVQAAPQSSATGAAVGTAATTNAQPRSSEQVSSDWQ
2) HLQEKLKEKERKREEEKAKKEKEREEKEKRKEKERKEKEERKEKEREREKEKGKDRSRKDEAESENVDMMDSHGSKDKKRENDKERKHRKRHHSMVDDVSSEKDDKEESKKSRRRRHSGDRKKSRKHTYTTDSDSENRHKRHKKDRDGSRRNGGYEELEDGELGEDGEIHAV
3) MAGNPQSSGAQPLRPAVVGSTGPPQNFGPPMSMQFRPVVPAQQTHQFIPAASQQFRPVGQGVPGSNIGISSGQTQMHHFPQPAQHLPRSGPPAPPSSQAIPMPYGQPSRPMTSGSLQPQQNPQMQNSHLPNLGGIGM
4) QALRAAAQQAHTETGTASVAPVAPTVSSGEIPSATTDSVTPGTTSAV
5) STVAIESASSNTKSNHDSSSLLNTASVPDGASAQDLEEAKKAMPVTGRVNVTPL
146
880
1
303
415
229
1051
137
349
468










Molecular Recognition Features






MoRF SequenceStartStop




1) YEELEDGELGEDGEIH
1034
1049