<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16657

Description Mediator of RNA polymerase II transcription subunit 13
SequenceMWTNVFRIGELQTISWFQFLPCDSDPNSLPEKSLKAEQKDAATHLILSAHLQLQNEGFLSTWTNSFFGPWDPSQGVHNPDEKIKLWLFLRGRHSSIIDTAQSAVSRLRVVGSGLWLAPGDSEEVALALSQALRNYIERALRGFSYVRFGDVFTRCHPFTPNEKSFRRAQPTFEFIFSATEEAIYVHAIISAKHIRGLCGDDIERISRNGSSRSTREGLPVIVGPNGMRGRLTGCCPSDLVKQVYISNSKVSNGFTVGVRFPVAQSSGCQLRGQSCYVEVTLGCPSTCSDKVLESNSNQSNNAIRPHTEESHFSSVGKGQQKQGTIYQLPILERTFIYPADAVVIPMMHRAFARSSVKRFWLQNWVGTSVLEMWPIWNFLGSSRIEHCFAFGNTCCSGPLDGLGGEFSGMRLQKQYNSSSNSITSSISSVSSTSSDSEYAVAAGAGDLEADADSLTCRHSGLSSNDQFENDGRKMVSKRARTGTTETTGQAGTVVSATIQDAYNTEYSVAEANNSAAAGAANIQVGSRWDWDDDDRGVGMDIQALISEFGDFGDFFENDVLAFGEPPGTAESQAFIFPASDCGDISGSPMGGMEVSHQKLSPVGLASFEGINPQSTALTEDTRNHSAEFTKDARSSVLGTHSSTPSTGKFDYLTKAEAMMTFAPEYAAVEMPASELPTSIFKSPYLPRSRKVESSHSSSVAYVYNAAPPSPRMMTLEEKPEVSAKLKLGSMGHGGNLSFQSSKFYTHVQSGTKKTNKRSVNDDVSSREGDVSFCLSSISSLTTVPTLQRKNQNMLETAHFLLSLKTVLATELECTMFQAAMCRIRHTLLSLSNKVPIGLRSTISDLVQSDTSTKSDIMTGKYEIKKKDNIPVRIAGDSDGGMHDGPVTAQVGVWRSVGAPKGTKSSITRNSENSSSLLLSTLHDENLNVYGQRQPLQDLLDAMALLVQQSTSFVDVSLDSDDGDGSYCWLALQEQRRRGFSCGPSMVHAGCGGLLATCHSVDIAGIDLIDPLSADIQASSVISLLQSDIKLALKSAFGILDGPLSAIDWCRGRGQSGDSKATGDGYSFQCTVSEAKDSSSTVTLAGEPISPPQSTGGSSCIREGARIDESSQRRSSQEICNSESEQQKGYCRFRPILTILPLPAIRVGYQDDWLDMPAKNLQFWEKGPLEPYASPKPIIFYALCPDIDLLSSAAADFFQQLGTIYEACKLGTHSPQIGGQMDPSSAKCLPSGLVLLDCPQQVKIASNHITAISSIRDYFLALSKGWNVKNFVKSLTKVIKELKLAPNLSVNQKEGSSGPCTVVYVVCPFPEPRAVLQTLIECASALGSVVLSPDKERRSLLHSHVARALNCTAAADEASASNVVMLSGFSIPKLVLQIVTVESLLGINRPVNELAILKDIAFTVYNKARRIPWAAPASDVLQSSAASGRSQSTLMHVTSPIPGLWKDCHAPRLSGPTLTREAELDSALRPGTWDNSWQPSRGAGLTCEPIRPVDLCGQDDTRYMFEPLFILAEPSSVEHGTPSTVFGSAVSETSSLKSVIDDSGMYMQSSTSGTNADIGTTSLLDGSEHDSKTASLHCCYGWTEDWRWLVCIWTDSRGELLDSYIFPFGGISSRQDTKVLQSLFVQILQQGCQILSCPSTDSSTARPRDIIITRFGCFFELECQEWQKAIYSVGGNEVKKWPLQLRRSMPDGIPSTTNGTSLQQQELGLIQDRNLLSSPGPSLYSPHSKSSFIKGGLAQSSTKKQLLAGQTGVDSARGLLQLVQSISLIGVSIDHTLHLILQPDASSAGGGSQSTSSSSLSGYLEGFTPVKSLGSMQESLLLIPSPSLRYLPSTPLQLPTCLTSESPPLAHLLHSKGSAVPLATGYVVSKAVPTMRKDPTELTKEDWPSILAVSLVDHYGRNNNSIQEKMVRGAGNITVGKQGRSLNPEAINRDCEMETHLVLESVAAELHSLSWMTASPVYLERRTALPFHCEMLLRLRRLLHYADKEFSRPPEKAHQT
Length1999
PositionKinase
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.235
Instability index54.60
Isoelectric point6.01
Molecular weight216827.17
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16657
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     968.58|     230|     236|     983|    1218|       1
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  983- 1218 (372.47/227.73)	PSMVHAGC...GG...........LLATC.HSVDIAGIDLIDPLSADIQASSVISLLQS.DIKLALKSAFGILD....GPLSAIDWCRGRGQSGDSKATgdgYSFQCTVSEAKDSSSTV....TL....AGEPI.SPPQSTGGSSCIREGARIDESSQRRSSQEICNSESEQQKGYCRFRPILTILPLPAIRVGYqddWLDMPAKNLQFWEK.....GPLEPYASPKPIIFYALCPDIDLLSSAAADFFQQ..LGTIYEACKL.G....THSPQIGG
 1222- 1454 (285.87/162.25)	PS..SAKClpsGL...........VLLDCpQQVKIAS.NHITAISS.IR.DYFLALSKGwNVKNFVKSLTKVIKelklAPNLSVN..QKEGSSGPCTVV...YVV.CPFPEPRAVLQTLiecaSA....LGSVV.LSPDKERRSLLHSHVARALNCTA..AADEASASNVVMLSGFSIPKLVLQIVTVESL.LG.....INRPVNELAILKD.....IAFTVYNKARRIPWAA..PASDVLQSSAASGRSQ..STLMHVTSPIpGlwkdCHAPRLSG
 1488- 1722 (310.24/176.83)	PIRPVDLC...GQddtrymfeplfILAEP.SSVE.HGTPSTVFGSAVSETSSLKSVI.D.DSGMYMQSSTSGTN....ADIGTTSLL..DGSEHDSKTA....SLHCCYGWTEDWRWLV....CIwtdsRGELLdSYIFPFGGISS.RQDTKVLQSLFVQILQQGCQILSCPSTDSSTARPRDIII....TRFGC...FFEL...ECQEWQKaiysvGGNE..VKKWPLQLRRSMPD.GIPSTTNGTSLQQqeLGLIQDRNLL.S....SPGPSL..
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.40|      26|      26|     790|     815|       2
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  790-  815 (43.54/30.00)	NQNMLETAHFLLSLKTVLATELECTM
  817-  842 (43.87/30.28)	QAAMCRIRHTLLSLSNKVPIGLRSTI
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.99|      20|      26|     563|     582|       3
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  563-  582 (39.96/25.72)	GEPPGTAE.SQAFIFP...ASDCG
  586-  609 (28.03/15.33)	GSPMGGMEvSHQKLSPvglASFEG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.43|      20|      26|     663|     687|       4
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  668-  687 (36.13/27.39)	VEMPASELPTSIFK.SPYLPR
  691-  711 (31.30/11.41)	VESSHSSSVAYVYNaAPPSPR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.59|      10|      26|     138|     148|       6
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  138-  148 (14.21/12.33)	RALRGFSYVrF
  167-  176 (19.37/11.23)	RAQPTFEFI.F
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.79|      27|      29|     226|     253|       8
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  226-  252 (51.53/30.01)	GMR...GRLTGC..............CPSDLVKQVYISNSKVSN
  257-  300 (36.26/14.57)	GVRfpvAQSSGCqlrgqscyvevtlgCPSTCSDKVLESNSNQSN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16657 with Med13 domain of Kingdom Viridiplantae
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