<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16655

Description mediator of RNA polymerase II transcription subunit 16 isoform X1
SequenceMNHPNPPPSLAKDPPDADQVAPRVADAAAAPRDSRVLDRAAAEADAVVEAEGGVEKRAAEEGVHTMDTGDGPPPTPATVFRIRLKQSPSSLRHKMNVPELCRNFSAVAWCGKLNVIACASETCARIPSWKQNSSGSSNANPPFWIPIHILNPERPTECSVFNVKADSPRDSVQFIEWSPRSCPRALLVANFHGRITIWTQPSQGPINLVRDASCWQCEHEWRQDLAVVTKWLSGMNPYHCLPSTSSTCANLKSTFEEKFLLQKSQVSVRWPHFLCVCSVFSSGSVQLHWAQWPPQSGSQPKWFRTSKGLLGAGPSGIMAADAIITEAGSMHVAGVPLVNPSTVVVWEVIPGPGNGIQATAKINTSSAVPPSLNPPCWTGFAPLAAYLFSLQQYFVSEEKQGKKLADHEISEAASLHCLPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTQGGSVISVVIVEGQYMSPYDPDEGPSITGWRVQCWESSLQPVVLHPIFGNPASSFGGQSPMQTVWSTRVNKSIPPTDDLRNPQAFASAPTISDERNSSESSGERANRLNFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGENFNPVDSYHANVGSTIAAPAFSSSGCCLASVWHDASKDRTILKIIRVLPPAIPSTQSKVNSAAWERAIADRFWWSLLSGVDWWDAVGCTQSAAEDGIVSLYSVIAVLDADFHSLPSIQHRQQHGPNLDRVKCRLLEGTNAQDVRALVLDMQARLLLDMLSKGIESALVNPATLLPEPWQASGETLSSMDADKMIVEQALVPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSGAAGARNMVGSPSQSAASPSTSQGAQSGVTSTTGSSQMQAWVQGAIAKISNNADGGSSTAANPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHKLCQLLLFCLIFRRKQSPRYIGNVQKNPDSNLQKVQPIANGKVEESSAVTRPTLGVAKLEEGQVVRAGQLVLGAKALEEGPTSKSVRLGSGNAGQGYTSDEVKVLFLILVDLCRRTANLQHPLPPSQLGANNIIIRLHYIDGSYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPENLGPLDNKAKPKLSGSFNPYVSALDKDYNDYSGSQGLWPRKRRLSERDAAFGLKTSVGLGSYLGIMGSRRDVITAVWRTGLEGVWYKCIRCLRQTCAFAQPGDPNPTNEREAWWISRWAHGCPMCGGTWVRVV
Length1272
PositionTail
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.202
Instability index44.98
Isoelectric point7.00
Molecular weight137215.66
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16655
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.40|      19|      21|     876|     894|       2
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  876-  894 (33.84/22.68)	GSSQMQAWVQG..AIAKISNN
  898-  918 (27.55/16.77)	GSSTAANPISGpsSFMPISIN
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     254.26|      58|     175|      84|     141|       5
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   84-  141 (104.56/58.73)	LKQSPSSLR..HKMNVPELCRNFSAVAW....CGKLNV.IACASETCARIPSWKQNSSGSSNANP
  154-  207 (73.23/38.75)	RPTECSVFN..VKADSPRDSVQF..IEWsprsCPRALL.VA...NFHGRITIWTQPSQGPIN...
  261-  314 (76.47/40.82)	LQKSQVSVRwpHFLCV...CSVFSS........GSVQLhWAQWPPQSGSQPKWFRTSKGLLGAGP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.41|      14|      17|     987|    1000|       6
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  987- 1000 (24.36/18.14)	VTRPTL..GVAKLEEG
 1003- 1018 (19.04/12.23)	VRAGQLvlGAKALEEG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.70|      23|     175|     220|     242|       7
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  220-  242 (45.27/32.20)	EWRQDLAVVTKWLSGMNPYHCLP
  397-  419 (39.43/26.97)	EEKQGKKLADHEISEAASLHCLP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.64|      36|     430|     337|     373|       8
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  337-  373 (58.77/36.64)	LVNPSTVV..VWEVIPGPGNGIQATaKINTSSAVPPSLN
  769-  806 (56.87/31.30)	LVNPATLLpePWQASGETLSSMDAD.KMIVEQALVPSIQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.18|      24|     111|     492|     518|       9
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  492-  515 (47.43/28.12)	LQPVV..LH..PIFGNPASSFGGQSPMQ
 1118- 1145 (39.75/15.37)	LHPPAeeWHrrNMFGGPWSDPENLGPLD
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.30|      17|      17|     835|     851|      11
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  835-  851 (28.06/19.69)	SHAVGASSGAAGARNMV
  855-  871 (27.24/18.82)	SQSAASPSTSQGAQSGV
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     148.34|      45|     635|      14|      63|      12
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   14-   63 (69.19/45.52)	PPDADQVAPRVADA....AAAPRDSRVLDRAAAEADAVveaegGVEKRAAEEGV
  651-  699 (79.14/42.66)	PPAIPSTQSKVNSAawerAIADRFWWSLLSGVDWWDAV.....GCTQSAAEDGI
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.57|      36|     620|     523|     561|      14
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  523-  561 (53.91/39.95)	NKSIPPTDDLRNPqaFASApTISDERNSSESSG..ERANRL
 1146- 1183 (60.66/34.18)	NKAKPKLSGSFNP..YVSA.LDKDYNDYSGSQGlwPRKRRL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16655 with Med16 domain of Kingdom Viridiplantae
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