<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16654

Description mediator of RNA polymerase II transcription subunit 16 isoform X2
SequenceMNHPNPPPSLAKDPPDADQVAPRVADAAAAPRDSRVLDRAAAEADAVVEAEGGVEKRAAEEGVHTMDTGDGPPPTPATVFRIRLKQSPSSLRHKMNVPELCRNFSAVAWCGKLNVIACASETCARIPSSNANPPFWIPIHILNPERPTECSVFNVKADSPRDSVQFIEWSPRSCPRALLVANFHGRITIWTQPSQGPINLVRDASCWQCEHEWRQDLAVVTKWLSGMNPYHCLPSTSSTCANLKSTFEEKFLLQKSQVSVRWPHFLCVCSVFSSGSVQLHWAQWPPQSGSQPKWFRTSKGLLGAGPSGIMAADAIITEAGSMHVAGVPLVNPSTVVVWEVIPGPGNGIQATAKINTSSAVPPSLNPPCWTGFAPLAAYLFSLQQYFVSEEKQGKKLADHEISEAASLHCLPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTQGGSVISVVIVEGQYMSPYDPDEGPSITGWRVQCWESSLQPVVLHPIFGNPASSFGGQSPMQTVWSTRVNKSIPPTDDLRNPQAFASAPTISDERNSSESSGERANRLNFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGENFNPVDSYHANVGSTIAAPAFSSSGCCLASVWHDASKDRTILKIIRVLPPAIPSTQSKVNSAAWERAIADRFWWSLLSGVDWWDAVGCTQSAAEDGIVSLYSVIAVLDADFHSLPSIQHRQQHGPNLDRVKCRLLEGTNAQDVRALVLDMQARLLLDMLSKGIESALVNPATLLPEPWQASGETLSSMDADKMIVEQALVPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSGAAGARNMVGSPSQSAASPSTSQGAQSGVTSTTGSSQMQAWVQGAIAKISNNADGGSSTAANPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHKLCQLLLFCLIFRRKQSPRYIGNVQKNPDSNLQKVQPIANGKVEESSAVTRPTLGVAKLEEGQVVRAGQLVLGAKALEEGPTSKSVRLGSGNAGQGYTSDEVKVLFLILVDLCRRTANLQHPLPPSQLGANNIIIRLHYIDGSYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPENLGPLDNKAKPKLSGSFNPYVSALDKDYNDYSGSQGLWPRKRRLSERDAAFGLKTSVGLGSYLGIMGSRRDVITAVWRTGLEGVWYKCIRCLRQTCAFAQPGDPNPTNEREAWWISRWAHGCPMCGGTWVRVV
Length1264
PositionTail
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.191
Instability index44.87
Isoelectric point6.87
Molecular weight136340.77
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16654
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     181.48|      51|      59|      59|     109|       1
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    6-   49 (39.75/17.11)	..............PP............PSlakdPPDADQVapRVADAA.AAPRDSRVLDRAAAEADAVVE
   59-  109 (90.38/49.06)	AEEGVHTMDTGDG.PP............PT....PATVFRI..RLKQSP.SSLRHKMNVPELCRNFSAVAW
  119-  174 (51.35/24.43)	ASETCARIPSSNAnPPfwipihilnperPT....ECSVFNV..K.ADSPrDSVQFIEWSPRSC........
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.15|      14|      17|     979|     992|       2
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  979-  992 (24.53/15.11)	VTRPTL..GVAKLEEG
  995- 1010 (18.62/ 9.76)	VRAGQLvlGAKALEEG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.64|      36|      56|     744|     798|       3
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  329-  365 (58.77/22.12)	LVNPSTVV..VWEVIPGPGNGIQATaKINTSSAVPPSLN
  761-  798 (56.87/26.44)	LVNPATLLpePWQASGETLSSMDAD.KMIVEQALVPSIQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.07|      16|      17|     834|     849|       4
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  834-  849 (28.28/15.27)	SGAAGARNMVGSPSQS
  854-  869 (25.23/12.73)	STSQGAQSGVTSTTGS
  889-  902 (18.56/ 7.15)	GGSSTAANPISGPS..
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     206.89|      77|     176|     212|     294|       5
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  212-  269 (73.27/61.77)	.........................................................................................................................E....WRQDL.AVVTKWLSGMNPYHCLPstsstCANLkSTFEEKFLLQKSQVSVRWPHFLCVC
  270-  294 (25.42/ 8.04)	SVFSSGSVQLHW.AQWPPQSG.SQPKW.............................................................................................................................................................
  389-  440 (69.22/43.24)	...........................frtskgllgagpsgimaadaiiteagsmhvagvplvnpstvvvwevipgpgngiqatakintssavppslnppcwtgfaplaaylfslqqyfvsE....EKQGK.KLADHEISEAASLHCLP.....VSNF.SAYVSPEAAAQSAATTTWGSGVTAV
  449-  496 (38.98/18.37)	SVISVVIVEGQYmSPYDPDEGpSITGW...............................................................................................rvqcWESSLqPVVLHPIFG.NP........................................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     505.08|     153|     580|     519|     682|       6
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  519-  682 (250.53/170.21)	PPTDDLRNPQAFASAPTISDERNSSESSGERANRLNF.DPYDLPNDVRQLAQIVYSAHGGEVA..VAFLRGGVHIFSG.ENFNP....VDSYHANVG..STIAAPAF....SSSGCCLASVWHdASKDRTILKIIRVLPPAIPSTQSKVNSAAWERAIadrfWWsllsgVDWWdAVGC
 1087- 1253 (254.56/147.74)	PHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFgGPWSDPENLGPLDNKAKPKLSGSFNpyVSALDKDYNDYSGsQGLWPrkrrLSERDAAFGlkTSVGLGSYlgimGSRRDVITAVWR.TGLEGVWYKCIRCLRQTCAFAQPGDPNPTNEREA....WW.....ISRW.AHGC
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.51|      28|     519|     177|     206|       8
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  177-  206 (44.20/40.44)	ALLVANFHGRITIWTQPSQGPiNLVRdASC
  699-  726 (53.30/37.54)	AVLDADFHSLPSIQHRQQHGP.NLDR.VKC
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.26|      18|     109|     908|     934|      11
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  908-  925 (31.04/37.71)	SINTGTFPGTPAVRLIGD
  936-  953 (32.22/13.74)	LLFCLIFRRKQSPRYIGN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16654 with Med16 domain of Kingdom Viridiplantae
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