Description | mediator of RNA polymerase II transcription subunit 16 isoform X2 |
Sequence | MNHPNPPPSLAKDPPDADQVAPRVADAAAAPRDSRVLDRAAAEADAVVEAEGGVEKRAAEEGVHTMDTGDGPPPTPATVFRIRLKQSPSSLRHKMNVPELCRNFSAVAWCGKLNVIACASETCARIPSSNANPPFWIPIHILNPERPTECSVFNVKADSPRDSVQFIEWSPRSCPRALLVANFHGRITIWTQPSQGPINLVRDASCWQCEHEWRQDLAVVTKWLSGMNPYHCLPSTSSTCANLKSTFEEKFLLQKSQVSVRWPHFLCVCSVFSSGSVQLHWAQWPPQSGSQPKWFRTSKGLLGAGPSGIMAADAIITEAGSMHVAGVPLVNPSTVVVWEVIPGPGNGIQATAKINTSSAVPPSLNPPCWTGFAPLAAYLFSLQQYFVSEEKQGKKLADHEISEAASLHCLPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTQGGSVISVVIVEGQYMSPYDPDEGPSITGWRVQCWESSLQPVVLHPIFGNPASSFGGQSPMQTVWSTRVNKSIPPTDDLRNPQAFASAPTISDERNSSESSGERANRLNFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGENFNPVDSYHANVGSTIAAPAFSSSGCCLASVWHDASKDRTILKIIRVLPPAIPSTQSKVNSAAWERAIADRFWWSLLSGVDWWDAVGCTQSAAEDGIVSLYSVIAVLDADFHSLPSIQHRQQHGPNLDRVKCRLLEGTNAQDVRALVLDMQARLLLDMLSKGIESALVNPATLLPEPWQASGETLSSMDADKMIVEQALVPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSGAAGARNMVGSPSQSAASPSTSQGAQSGVTSTTGSSQMQAWVQGAIAKISNNADGGSSTAANPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHKLCQLLLFCLIFRRKQSPRYIGNVQKNPDSNLQKVQPIANGKVEESSAVTRPTLGVAKLEEGQVVRAGQLVLGAKALEEGPTSKSVRLGSGNAGQGYTSDEVKVLFLILVDLCRRTANLQHPLPPSQLGANNIIIRLHYIDGSYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPENLGPLDNKAKPKLSGSFNPYVSALDKDYNDYSGSQGLWPRKRRLSERDAAFGLKTSVGLGSYLGIMGSRRDVITAVWRTGLEGVWYKCIRCLRQTCAFAQPGDPNPTNEREAWWISRWAHGCPMCGGTWVRVV |
Length | 1264 |
Position | Tail |
Organism | Phoenix dactylifera (Date palm) |
Kingdom | Viridiplantae |
Lineage | |
Aromaticity | 0.07 |
Grand average of hydropathy | -0.191 |
Instability index | 44.87 |
Isoelectric point | 6.87 |
Molecular weight | 136340.77 |
Publications |
Annotated function |
|
GO - Cellular Component | |
GO - Biological Function | |
GO - Biological Process |
Binary Interactions |
Repeats | >MDP16654 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 181.48| 51| 59| 59| 109| 1 --------------------------------------------------------------------------- 6- 49 (39.75/17.11) ..............PP............PSlakdPPDADQVapRVADAA.AAPRDSRVLDRAAAEADAVVE 59- 109 (90.38/49.06) AEEGVHTMDTGDG.PP............PT....PATVFRI..RLKQSP.SSLRHKMNVPELCRNFSAVAW 119- 174 (51.35/24.43) ASETCARIPSSNAnPPfwipihilnperPT....ECSVFNV..K.ADSPrDSVQFIEWSPRSC........ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 43.15| 14| 17| 979| 992| 2 --------------------------------------------------------------------------- 979- 992 (24.53/15.11) VTRPTL..GVAKLEEG 995- 1010 (18.62/ 9.76) VRAGQLvlGAKALEEG --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 115.64| 36| 56| 744| 798| 3 --------------------------------------------------------------------------- 329- 365 (58.77/22.12) LVNPSTVV..VWEVIPGPGNGIQATaKINTSSAVPPSLN 761- 798 (56.87/26.44) LVNPATLLpePWQASGETLSSMDAD.KMIVEQALVPSIQ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 72.07| 16| 17| 834| 849| 4 --------------------------------------------------------------------------- 834- 849 (28.28/15.27) SGAAGARNMVGSPSQS 854- 869 (25.23/12.73) STSQGAQSGVTSTTGS 889- 902 (18.56/ 7.15) GGSSTAANPISGPS.. --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 206.89| 77| 176| 212| 294| 5 --------------------------------------------------------------------------- 212- 269 (73.27/61.77) .........................................................................................................................E....WRQDL.AVVTKWLSGMNPYHCLPstsstCANLkSTFEEKFLLQKSQVSVRWPHFLCVC 270- 294 (25.42/ 8.04) SVFSSGSVQLHW.AQWPPQSG.SQPKW............................................................................................................................................................. 389- 440 (69.22/43.24) ...........................frtskgllgagpsgimaadaiiteagsmhvagvplvnpstvvvwevipgpgngiqatakintssavppslnppcwtgfaplaaylfslqqyfvsE....EKQGK.KLADHEISEAASLHCLP.....VSNF.SAYVSPEAAAQSAATTTWGSGVTAV 449- 496 (38.98/18.37) SVISVVIVEGQYmSPYDPDEGpSITGW...............................................................................................rvqcWESSLqPVVLHPIFG.NP........................................ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 505.08| 153| 580| 519| 682| 6 --------------------------------------------------------------------------- 519- 682 (250.53/170.21) PPTDDLRNPQAFASAPTISDERNSSESSGERANRLNF.DPYDLPNDVRQLAQIVYSAHGGEVA..VAFLRGGVHIFSG.ENFNP....VDSYHANVG..STIAAPAF....SSSGCCLASVWHdASKDRTILKIIRVLPPAIPSTQSKVNSAAWERAIadrfWWsllsgVDWWdAVGC 1087- 1253 (254.56/147.74) PHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFgGPWSDPENLGPLDNKAKPKLSGSFNpyVSALDKDYNDYSGsQGLWPrkrrLSERDAAFGlkTSVGLGSYlgimGSRRDVITAVWR.TGLEGVWYKCIRCLRQTCAFAQPGDPNPTNEREA....WW.....ISRW.AHGC --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 97.51| 28| 519| 177| 206| 8 --------------------------------------------------------------------------- 177- 206 (44.20/40.44) ALLVANFHGRITIWTQPSQGPiNLVRdASC 699- 726 (53.30/37.54) AVLDADFHSLPSIQHRQQHGP.NLDR.VKC --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 63.26| 18| 109| 908| 934| 11 --------------------------------------------------------------------------- 908- 925 (31.04/37.71) SINTGTFPGTPAVRLIGD 936- 953 (32.22/13.74) LLFCLIFRRKQSPRYIGN --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) PPDADQVAPRVADAAAAPRDSR 2) VFRIRLK | 14 79 | 35 85 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab