<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16652

Description pre-mRNA-processing protein 40A-like isoform X3
SequenceMPMQFGHVVPAQQTHQFIPAASQQFRPVGQGVHGTNIGMPSDQTQMPHFSQPAHHLPPRSGPAAPPSSQAVPMPYVQPNRPMTSGTLQPQQNPQMPHNHLPNFGGVGMPLSSSYTFTTSYGQPQHTFNTPSQYQPASQMHAPVMPAVGQPWSTHGTQNVPLVTHLVQAAAQSSAAAGTVPTTNAQPSSAEQASSDWQVHTSDDGKRYYYNKKTRQSSWEKPFELMTPVERADASTDWKEFSTPDGRTYYYNKVTKVSKWIIPEELKLAREQALRAAAAQPCTETGAASAVPAAPVVSSGEIPPATASVTPEATYAVVSSPVSVSANAIVPPGVMASVSPSVAVVPSAGIPSSSSLGILNTVGASNPQTPVTPLLAPVPANTVVPTVAIEAALSNAKSNHDNSSLVNIASLPDGASAQDLEEAKKGMPVTGRSNAASLEEKTIDEEPFVYANKQEAKNAFKTLLESANVESDMTWEQAMRVIISDKRYGALKTLGERKQAFHEYLGQRKKQEAEERRIKQKKAREDFTRMLEECTELTSSTRWSKAVTMFENDERFNAVERARDREDLFESYLLDLLKKERAKAAEEHKQNIMDYRAFLESCDFIKANSQWRKVQDRLEDDERCSRLEKIDRLEIFQEYIHNLEKEEEEQRKKQKEQLRRQERKNRDEFRKLMEGHVAAGILTAKTHWRDYCMQVKDLPPYKAVASNTSGSTPKDLFEDVAEELDKQYHEDKVQIKEAIKIQKIALASSWMFEDLKVAISADDSLKGISEINMKLVFDELLERLREKEEKEAKKHQRLADNFSDLLYSIKEITASSGWEDCKSLFEDTQEYRSIGDENFVRGIFEEHVARLREKLKEKERKREEEKAKKEKEREEKEKRKEKERKEKEERKEKEREREKDKGKDRSRKDEAGSENVDMMDSYGSKDRKREKDKERKQRKHHHSMADDVSSEKDEKEESKKSRRYSGDRKKSRKHSYSSDSDSDNRHKRHKKDRDGSHRNNGYEELEDGELGEDGEIFKNHVPGH
Length1023
PositionUnknown
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.998
Instability index53.47
Isoelectric point6.57
Molecular weight115877.94
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16652
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     196.64|      32|      32|     851|     882|       1
---------------------------------------------------------------------------
  495-  519 (29.71/12.15)	........ERKQAFHEYLG.QRKKQEAEER..........RIKQ
  851-  882 (48.64/24.77)	REKLKE.KERKREEEKAKK.EKEREEKEKR..........KEKE
  886-  927 (37.64/17.44)	KEERKE.KEREREKDKGKD.RSRKDEAGSEnvdmmdsygsKDRK
  928-  960 (40.18/19.13)	REKDKErKQRKHHHSMADDvSSEKDEKEES..........K.KS
  961-  991 (40.46/19.31)	RRYSGD.RKKSR.KHSYSS.DSDSDNRHKR..........HKKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     144.50|      38|      38|     186|     223|       2
---------------------------------------------------------------------------
  186-  223 (73.57/40.66)	PSSAEQASSDWQVHTSDDGKRYYYNKKTRQSSWEKPFE
  227-  264 (70.93/38.96)	PVERADASTDWKEFSTPDGRTYYYNKVTKVSKWIIPEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     401.30|      65|      66|     525|     589|       3
---------------------------------------------------------------------------
  452-  493 (35.37/20.06)	...............KQ.....eaknAFKTLL.ESAN...VESDMTWEQAMRVIIS.......DKRYGAL...KT...............L
  520-  576 (82.12/58.22)	KKA...R..................eDFTRMLEECTE...LTSSTRWSKAVTMFEN.......DERFNAV...ERARDREDLFESYLLDLL
  577-  643 (90.96/65.43)	KKE...RAKAAEE.HKQ......nimDYRAFLESCDF...IKANSQWRKVQDRLED.......DERCSRL...EKI.DRLEIFQEYIHNLE
  644-  719 (62.21/41.97)	KEEeeqRKKQKEQlRRQ...erknrdEFRKLMEGHVAagiLTAKTHWRDYCMQVKD.......LPPYKAVasnTSGSTPKDLFED.....V
  720-  783 (50.72/32.59)	AEE...LDKQYHE.DKVqikeaikiqKIA...........LASSW.......MFEDlkvaisaDDSLKGI...SEI.NMKLVFDE.LLERL
  784-  850 (79.92/56.42)	REK...EEKEAKK.HQR......ladNFSDLLYSIKE...ITASSGWEDCKSLFED.......TQEYRSI...GDENFVRGIFEEHVARL.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     203.55|      47|      48|       1|      48|       4
---------------------------------------------------------------------------
    1-   48 (90.07/62.42)	MPMQFGHV.VP...........AQQTH......QFIPAA.SQQFRP....VGQ..GVHGTNiGMPSDQTQMPH
   56-   97 (74.55/46.65)	LPPRSGPA.AP.............PSS......QAVPMPyVQPNRP....MTS..GTL.....QPQQNPQMPH
  100-  160 (38.93/20.58)	LP.NFGGVgMPlsssytfttsyGQPQHtfntpsQYQP.A.SQMHAPvmpaVGQpwSTHGTQ.NVP........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.78|      16|      17|     283|     298|       5
---------------------------------------------------------------------------
  283-  298 (27.78/13.73)	ETGAAS......AVPAAPVVSS
  331-  352 (19.00/ 7.29)	PGVMASvspsvaVVPSAGIPSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.51|      12|      17|     410|     421|       6
---------------------------------------------------------------------------
  392-  403 (17.57/ 8.93)	LSNAKSNHDNSS
  410-  421 (20.95/12.18)	LPDGASAQDLEE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16652 with Med35 domain of Kingdom Viridiplantae
Unable to open file!