<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16651

Description pre-mRNA-processing protein 40A-like isoform X1
SequenceMASNSQFSGVQPLRPAVVRSAVPPQNFGPPMPMQFGHVVPAQQTHQFIPAASQQFRPVGQGVHGTNIGMPSDQTQMPHFSQPAHHLPPRSGPAAPPSSQAVPMPYVQPNRPMTSGTLQPQQNPQMPHNHLPNFGGVGMPLSSSYTFTTSYGQPQHTFNTPSQYQPASQMHAPVMPAVGQPWSTHGTQNVPLVTHLVQAAAQSSAAAGTVPTTNAQPSSAEQASSDWQVHTSDDGKRYYYNKKTRQSSWEKPFELMTPVERADASTDWKEFSTPDGRTYYYNKVTKVSKWIIPEELKLAREQALRAAAAQPCTETGAASAVPAAPVVSSGEIPPATASVTPEATYAVVSSPVSVSANAIVPPGVMASVSPSVAVVPSAGIPSSSSLGILNTVGASNPQTPVTPLLAPVPANTVVPTVAIEAALSNAKSNHDNSSLVNIASLPDGASAQDLEEAKKGMPVTGRSNAASLEEKTIDEEPFVYANKQEAKNAFKTLLESANVESDMTWEQAMRVIISDKRYGALKTLGERKQAFHEYLGQRKKQEAEERRIKQKKAREDFTRMLEECTELTSSTRWSKAVTMFENDERFNAVERARDREDLFESYLLDLLKKERAKAAEEHKQNIMDYRAFLESCDFIKANSQWRKVQDRLEDDERCSRLEKIDRLEIFQEYIHNLEKEEEEQRKKQKEQLRRQERKNRDEFRKLMEGHVAAGILTAKTHWRDYCMQVKDLPPYKAVASNTSGSTPKDLFEDVAEELDKQYHEDKVQIKEAIKIQKIALASSWMFEDLKVAISADDSLKGISEINMKLVFDELLERLREKEEKEAKKHQRLADNFSDLLYSIKEITASSGWEDCKSLFEDTQEYRSIGDENFVRGIFEEHVARLREKLKEKERKREEEKAKKEKEREEKEKRKEKERKEKEERKEKEREREKDKGKDRSRKDEAGSENVDMMDSYGSKDRKREKDKERKQRKHHHSMADDVSSEKDEKEESKKSRRYSGDRKKSRKHSYSSDSDSDNRHKRHKKDRDGSHRNNGYEELEDGELGEDGEIFKNHVPGH
Length1053
PositionUnknown
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.976
Instability index54.12
Isoelectric point6.72
Molecular weight118996.46
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16651
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     196.64|      32|      32|     881|     912|       1
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  525-  549 (29.71/11.14)	........ERKQAFHEYLG.QRKKQEAEER..........RIKQ
  881-  912 (48.64/22.88)	REKLKE.KERKREEEKAKK.EKEREEKEKR..........KEKE
  916-  957 (37.64/16.06)	KEERKE.KEREREKDKGKD.RSRKDEAGSEnvdmmdsygsKDRK
  958-  990 (40.18/17.63)	REKDKErKQRKHHHSMADDvSSEKDEKEES..........K.KS
  991- 1021 (40.46/17.80)	RRYSGD.RKKSR.KHSYSS.DSDSDNRHKR..........HKKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     191.23|      22|      25|      70|      91|       2
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   30-   44 (28.27/10.54)	P........MPM..QFGHVV..PAQQT
   49-   65 (25.52/ 8.92)	P..AASQ.QFRPVGQGVH.......GT
   70-   91 (45.49/20.73)	P..SDQT.QMPHFSQPAHHL..PPRSG
   96-  115 (32.14/12.83)	P..SSQAvPMP.YVQPNR....PMTSG
  119-  135 (32.26/12.90)	P..QQNP.QMPH.....NHL..PNFGG
  139-  164 (27.55/10.11)	PlsSSYT.FTTSYGQPQHTFntPSQYQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     180.64|      38|      38|     216|     253|       3
---------------------------------------------------------------------------
  165-  212 (43.55/25.49)	PASQMHApvmpavGQPWSTHgTQNVPLVTHLVQAAAQSSAAAgtvPTT
  216-  253 (70.94/46.57)	PSSAEQA......SSDWQVH.TSDDGKRYYYNKKTRQSSWEK...PFE
  257-  294 (66.16/42.89)	PVERADA......STDWKEF.STPDGRTYYYNKVTKVSKWII...PEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     408.42|      65|      65|     555|     619|       4
---------------------------------------------------------------------------
  489-  553 (24.35/10.18)	.FKTLL.ESAN...VESDMTWEQAMRVIIS.......DKRYGAL...KT...............LgerkqafheylgqrkkqeaeerrikqKKA...R..........
  555-  619 (101.85/68.19)	DFTRMLEECTE...LTSSTRWSKAVTMFEN.......DERFNAV...ERARDREDLFESYLLDLL..........................KKE...RAKAAEE.HKQ
  623-  690 (85.58/56.01)	DYRAFLESCDF...IKANSQWRKVQDRLED.......DERCSRL...EKI.DRLEIFQEYIHNLE..........................KEEeeqRKKQKEQlRRQ
  697-  762 (76.35/49.10)	EFRKLMEGHVAagiLTAKTHWRDYCMQVKD.......LPPYKAVasnTSGSTPKDLFED.....V..........................AEE...LDKQYHE.DKV
  772-  826 (56.89/34.54)	KIA...........LASSW.......MFEDlkvaisaDDSLKGI...SEI.NMKLVFDE.LLERL..........................REK...EEKEAKK.HQR
  830-  880 (63.39/39.40)	NFSDLLYSIKE...ITASSGWEDCKSLFED.......TQEYRSI...GDENFVRGIFEEHVARL............................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     123.93|      26|      26|     324|     349|       5
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  324-  349 (44.85/23.08)	PV.VSS.GEI.PPAT.ASVTPEATYAVVSS
  350-  376 (24.90/ 9.87)	PVsVSA.NAIvPPGVmASVSP..SVAVVPS
  380-  398 (20.16/ 6.72)	PS.SSSlGIL.NTVG.AS.NPQ.......T
  399-  424 (34.01/15.90)	PV.TPL.LAP.VPAN.TVVPTVAIEAALSN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16651 with Med35 domain of Kingdom Viridiplantae
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