<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16650

Description mediator of RNA polymerase II transcription subunit 12
SequenceMQRYSAASCGGGVNNSAISGASSRENARAESTLSTSNFTLNTRRQPQLSSYKLKCDKEPLNCRLGPPDFYPQTHNCPEETLTREYLQFGYKETVEGIEEAREIALAQIPNFLKPELIVKYKEAIRKRLRAINESRAQKRKAGQVYGVPLSGSLLKPGVFPEQRSCSEDFRRKWIEALSQHHKRLRSLAEHVPHGYRRKSLFEVLIHHSVPFLRATWFIKVTYLNQVRPTSTNVSSAAPDKTPLSCTDLWTKDVIGYLQQLLNEFFSKDGGSFSSLPGRDQSSQGLIAGPGPAQCKSDSVPATPDNEEPSLHFKWWYTVQLLRWHCSEGLLLPSLIIEWVLDQLQEKDSPEALELLLPVVFDLIESIVMSQTYVRMLVDIAVRAINGLSSSDLSSVDNLKKQSLTSALVRILQYMILSVPDTFVALDCFPLPSCVVPDLNCGNTAPKVPEGVESVRFDMQDTYLQYLSCGYTVSSIQKRASKLAKIVNPSFQGHGAAKVVKALDRALMTGDLKFTYNSLFEDLSDMAIEEQWVAEVSPCLRSSLKWIGTVGLPLICSVFFLCEWATCDYRDCRTVFPQSHKFTGGKDFSQVYIALLLLKLKLEDMRISSQSKSGSTLLSSSSGKATSVHDTSLGGTLVENVSAVNNMMFSGSRKHKIDIFQSPGPLHDIIVCWLDQHEVGNAGGFKHVEVFIMELIRNGIFYPPAYVRQLIVSGIMDRNVTAVDLERRRRHQKILKQLPGSCLVDVLAEAKIVEAPLLYEIVCVYSNERQLMLRGLLSDEFNDMGTKGDSYQRFALQKNKDHSASVREGKHVKTKDEAAELKILISTLLQFPYSMQVETHPEESQRIFKRRLGLFDIKVHLTEVISGCKECRHAKRQKLGIERSSSCQGFSSNQSDDEDTWWVRQGIKSRESFKVEMPLKSTKLPSRGRQKTVRKTQSLAQLAAARIENSQGASTSHACDNKESRTHHKSVSEGEVPKDVDWMKTTHLSNIRKAIKRLRWLERRSISIWLLKTIRQLVEENEKATSNASNCTGIFSVLTDDRNVVRWRIGEDELLSILCILDVASDLLSVVKFLLWLLRKTFGRPSIAVHVGRSIMLPQNRENQVCQVGEAFLLSSLQRYENILLVTGLLPEVLTTLMQRTVALVTSNGRSFRAASFAYARNLLKKYKDVASVTKWEKTFRATCDQRLFAELDAGRSLDGDLLFSSGVPAGVEDMDGHLRQKITGRLPRTSPNLKEMVQRHVDEVVHCFYGKERKPFPVSNPKGPTLENWEDSNKIAQDIVLGLLDCIRQNGEATLEGDSSIVASAVSAIVGNVGPVISKLPDFTSGSYQSFSSTTHSLNCVRQILHIHITSLCLLKEALGERLSCIFDISLAAEASSAISGVFAPGKTHRSQFQTSPETHDIYSSHSNENMKNSAKLFVRAAKAAAAVSALVVGAIVHGATSLERMVTAFKLKEGLDVLQFIKSARSSSNGMSCSIGSLKLDHCIEVYVHWFRLLVGNCRTVSDGLVAEILGESYILALSRMQRMLPLNLVLPPAYSIFAMVIWRPYILNINIATREDIQLYHYLSVAISDAIRHQPFRDLCFRNTHVLYDLVATDVGDSEFAAMLELHNPDKHLKTMTFVPLRARLFLNALIDCKMPAFTIIQGDGSWISGPNEQRAFTENEAKLQDQLVHVLDNLQAAKFHWQWVELRLLLNEQALNEKIETQNLSLVEAIRSLSPNSGNSILSENEKKFTEIILTRTLVRPDAAPLYSELVHLLGKLQQESLVVDIKWLLGGQDVLLGRKSIRQQLIHVAQRNGLSTKPQFWKPWGWSCSITDDVANRGDKRKLEAISIEEGELVDECVDVKRSGKMNFHSIDAEGFSSTQQYITEKALAELTLPCIDRSSSDIRNLFAAELIKQMGSIDQQINAITRGGNKQASALSSGTEGSSSKGSTCKGMRGGSPVLGRRSTGVSDSTPLCSTALKASLWLRLQFLLRLLPIIYSDREPSARNMRQMLASIILRLLGTRVVHEDADLSLSAMHVGSLQRDEESLVEASVAASLEYSGDSLFERLLCVLHGLLSNCKPSWLKPKPTSKSSVKSPRDFSAFDREAAESLQADLDRMELPAAVRRRIQAAMPILPPLLPFSSPLSSVAHASLQPNSSTPGTHQRTHPTARTSTNVSGRNKTVPSQDLDMEIDPWTLLEDGTGSASTSGGNSSMVGVGGDHSNLKACSWLKGAVRVRRSDLTYIGALDEDS
Length2234
PositionKinase
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.214
Instability index48.03
Isoelectric point8.62
Molecular weight248576.77
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16650
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     151.72|      36|      78|     634|     669|       1
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  634-  669 (60.06/43.22)	GTLVENVSAVNNMMFSGSRKHKIDIFQSPGP.LHDII
  675-  707 (45.54/30.71)	QHEVGNAGGFKHVEVFIMELIRNGIFYPPAY.VR...
  713-  746 (46.12/31.21)	GIMDRNVTAVD...LERRRRHQKILKQLPGScLVDVL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.59|      26|      78|     988|    1013|       2
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  988- 1013 (45.00/25.71)	SNIRKAIKRLRWL.....ERRSISIWLLKTI
 1064- 1094 (38.59/21.00)	SDLLSVVKFLLWLlrktfGRPSIAVHVGRSI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     173.50|      58|     585|    1402|    1459|       3
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 1402- 1459 (93.48/73.43)	IYSSH..SNENMKNS.AKLFVR.......AAKAAAAVSALVVGAIVHGATSLERMVTAFKLKEGLDVL
 1980- 2047 (80.03/61.55)	IYSDRepSARNMRQMlASIILRllgtrvvHEDADLSLSAMHVGSLQRDEESLVEASVAASLEYSGDSL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.24|      38|    1233|     917|     955|       4
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  917-  955 (59.06/50.73)	PLKSTKLPSRGRQKTVrKTQSL.AQLAA.ARIENSQG.ASTS
 2151- 2191 (53.18/39.53)	PTARTSTNVSGRNKTV.PSQDLdMEIDPwTLLEDGTGsASTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     278.46|      93|     396|    1108|    1219|       5
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 1108- 1219 (129.70/148.77)	GEAFLLsSLQRYENILLVTGLLPEVLTTLmqrtvALVTSNGrsfraasfaYARNL.........LKKYKDVA.SVTKWEKTFRATC..DQRLFAELDAGRSldGDLLFSSGVPagVEDMDGHLR
 1512- 1616 (148.76/113.42)	GESYIL.ALSRMQRMLPLNLVLPPAYSIF.....AMVIWRP.........YILNIniatrediqLYHYLSVAiSDAIRHQPFRDLCfrNTHVLYDLVATDV..GDSEFAAMLE..LHNPDKHLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     205.54|      64|     970|     824|     893|       9
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  824-  893 (99.34/82.21)	ISTLLQF..PYSMQVETHPEESQRIFKRRLGlfDIKVHLTEVISgckECRHAKRQ.KLGIeRSSSCQGFSSNQ
 1798- 1864 (106.20/67.87)	LSTKPQFwkPWGWSCSITDDVANRGDKRKLE..AISIEEGELVD...ECVDVKRSgKMNF.HSIDAEGFSSTQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.00|      15|      80|    1664|    1678|      10
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 1664- 1678 (26.26/13.52)	AKLQDQLVHVLDNLQ
 1747- 1761 (26.74/13.89)	APLYSELVHLLGKLQ
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     163.70|      55|      87|     357|     412|      12
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  357-  412 (84.21/60.74)	PVVFDLIESI..VMSQTYVRMLV.DIAVRAINGlSSSDLSSVDNLKKQSLTSA.LVRILQ
  445-  503 (79.49/52.62)	PKVPEGVESVrfDMQDTYLQYLScGYTVSSIQK.RASKLAKIVNPSFQGHGAAkVVKALD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.44|      31|    1233|     121|     157|      13
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  121-  157 (45.16/45.66)	KEAIRKRLRAINESRAQKRKAGQVYGVplsgslLKPG
 1356- 1386 (51.28/35.66)	KEALGERLSCIFDISLAAEASSAISGV......FAPG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16650 with Med12 domain of Kingdom Viridiplantae
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