<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16647

Description probable mediator of RNA polymerase II transcription subunit 37c
SequenceMAKAEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPSVQNDMKLWPFKVIPGPGDKPMIVVQYKCEEKQFSAEEISSMVLMKMKEIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKAGSSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSGVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNERVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTIRDEKIAAKLPQADKKKIEDAIEQAINWLDGNQLAEADEFEDKMKELESICNPIIAKMYQGAGAGMAGGMDEDIPAAGGSSGAGPKIEEVD
Length648
PositionUnknown
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.421
Instability index34.63
Isoelectric point5.18
Molecular weight71219.05
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16647
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.30|      40|      74|     219|     260|       1
---------------------------------------------------------------------------
  219-  260 (67.44/48.78)	EGI.FEVKAT.AGDTHLGGEDFDNRMvnHFVQEFKRKNKKDISG
  294-  335 (62.86/39.72)	EGIdFYTTITrARFEELNMDLFRKCM..EPVEKCLRDAKMDKSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.27|      18|      21|      37|      54|       2
---------------------------------------------------------------------------
   15-   32 (19.08/ 9.20)	....TTYSCVGVWQHDRveIIA
   37-   54 (32.67/20.20)	NR..TTPSYVAFTDTER..LIG
   59-   77 (24.52/13.61)	NQvaMNPTNTVF.DAKR..LIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.07|      24|     397|     101|     126|       3
---------------------------------------------------------------------------
  101-  126 (36.83/28.89)	GDKPMIVVQYkcEEKQFSAEEISSMV
  501-  524 (40.24/24.21)	GQKNKITITN..DKGRLSKEEIEKMV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     136.24|      45|     189|     169|     217|       4
---------------------------------------------------------------------------
  169-  217 (63.69/47.63)	GLNVMRIINePTaAAIAYGLDKKAG.SSGEKNVLIFDLggGTFDVSLLTI
  361-  406 (72.54/39.82)	GKELCKSIN.PD.EAVAYGAAVQAAiLSGEGNERVQDL..LLLDVTPLSL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16647 with Med37 domain of Kingdom Viridiplantae
Unable to open file!