<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16645

Description Mediator of RNA polymerase II transcription subunit 14
SequenceMAAELGQQTVEFSALVRRAAEESYLSLKELVDRSKAPEERSDSEKKIDLLKFIVKTRQRMLRLHVLAKWCQQVPLVHYCQQLAATLSSHDTCFIQTADSLFYMQEGLQHARAPIFDVPSAAEVLLTGGYQRLPKCIEDLGIQITLSKDEQKPALKKLDTVLRSKLLEVSLPKEISDVTVSDGTAVLRVDGEFKVFLTVGYRGHLSLWRILHLELLVGEKNGPIKLEETRRYALGDDLERRMAAAENPFTVLYTVLHELCVALVMDTVLRQVQVLRQGRWKDAIRFELIFDDSAGQGGNTTGVVQLAQDGELDSTGLKIPGLKIIYWLDFDKNTGGSDSGSSPFIKIEPGQDLQIKCQHSSFVLDPLTDREAKFSLDQSCIDVEKLLLRAIACNRHTRLLEIQRELSKSVHICRGSGDVILKREGAELDTDLQKRDNKCVIEDYCWDEVLRVRTYGVSYITLGINIRNGRFLLQSSKNVLAPSALLDSEEALNQGSITATEVFMSLRSKSILHLFASTGKFLGLKVYDQSSTTIKIPKSILHGPDLLLMGFPRCGNSYYLMLQLDKDFKPVFTLLETQTDPGGKSHSISDANEVIRFNKIDIGQMQIVEDELNMSLFDWEKLHSLPNIGACNQISEHGLLPELGLESALQHPACSQPSFSSVVDEVFESEKGASGPPFPITSYLPVSYNMPPLSHLVSLPTSHQGIKAGVSSPKWEGVQQSQINNIVNVSAGLTSSSNSMSLSNNLKGLRCNSVTNSLPSSSPARNSSIENFSASKSDQDLSSLKSPHLAEVGRFSSMDDNQARLVHESPKELGMIDGSRPPQLLPPLRTTGPRPSVQNTSSNNFKSSSTGHLTRYLKDNQYSSSMVVQTSQTAQSGISSTSGYDGINKHERKSKKRLLSDFLTLIPLPRGLKSGTEQCKRMKILESARCHPPVSQALSSVLTCKSSGYTYGDLLAEPNHGITASNIYVSVLLHVVKHCSLCIKHAQLTGQMDALDIPYVEEVGLRTPSSSLWLRLPFIRADSWQDICLRLGKPGSMCWDVKINDPHFKELWELHEGSTTTLWGSGVRVANTSEVDSHIHYDPEGVVLSYKTVEADSIQRLISDLRRLSNARLFACGMQKLIGIKVDDKLDESNTDSETKLQSATKRTGEAADKLSEQMRKTFKIEAVGLMSVWFSYVSMPVIVHFVVEWEAGKEGCTMHVSPDQLWPHTKFLEDFVNGAEVASFLDCIRLTAGPLLALGGAIRPARMPMPVSANHSPIPKQNNFITSQGLLPNTSSSNVMQPASSAPALTAVMAQLGSHSLHSAAMLSAAGRGGPGLVPSSLLPYDVSVVLRGPYWIRIIYRKKFAVDMRCFAGDQVWLQPATPPKGGPAAGGSLPCPQFRPFIMEHVAQGLNALEPNFSGAAHAGGHLSSSNSNPSSGSQQLVPNASRLNVTASGAMARTSAVGSQVAGSLSRVSNAILASSGLASGISGVPFRVSPGPGFPAHVRGELNTAFIGLGDDGGYGGGWVPLAALKKVLRGILKYLGVLWLFAQLPDLLKEILGSILKENEGALLNLDQEQPALRFFVGGYVFAVSVHRVQLLLQVLSVRRFQHQQQQQQTQTNTQEELAPNEINEICDYFSRRVASEPYDASRVASFITLLTLPVSVLREFLKLISWKKGLSQAHSGDIATAQRARMELCLENHSGSVLDENSENFSASRSNIHHDRAHNSVDFALNFVLDPAHIPHMNAAGGAAWLPYCVSVRLKYSFGENTHISFLGMDGSHGGRACWLRFEDWEKCKQRVARTVEYANGSSAGDVSQGRLRLVAETVQRTLHVSLQQLRDGALSSSSTAT
Length1832
PositionTail
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.187
Instability index46.00
Isoelectric point7.19
Molecular weight200791.54
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16645
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.95|      19|      23|    1428|    1450|       1
---------------------------------------------------------------------------
 1428- 1450 (26.14/26.77)	SRLnvtaSGAMARTSAVGSQVAG
 1453- 1471 (30.81/19.75)	SRV....SNAILASSGLASGISG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.81|      20|      23|     771|     792|       2
---------------------------------------------------------------------------
  771-  792 (29.36/26.91)	FSASKSDQDLSSLKSPHlaEVG
  794-  813 (35.45/25.24)	FSSMDDNQARLVHESPK..ELG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.72|      13|      23|    1000|    1012|       4
---------------------------------------------------------------------------
 1000- 1012 (24.14/15.74)	EEVGLR..TPSSSLW
 1024- 1038 (23.58/15.16)	QDICLRlgKPGSMCW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.45|      23|     257|    1473|    1501|       5
---------------------------------------------------------------------------
 1473- 1501 (32.37/38.60)	PFRVSPGPGFPahvRGElNT..AFIGLgdDG
 1737- 1761 (41.08/24.93)	PYCVSVRLKYS...FGE.NThiSFLGM..DG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.40|      27|      32|     634|     662|       6
---------------------------------------------------------------------------
  634-  662 (45.13/31.93)	SEHGLL.PELGLESALqhPAC.SQPSFSSVV
  668-  696 (40.27/21.51)	SEKGASgPPFPITSYL..PVSyNMPPLSHLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     114.88|      31|     264|    1375|    1406|       8
---------------------------------------------------------------------------
 1349- 1370 (38.11/20.85)	....MRC.....FAGDQV..WLQPATPPKGGPA
 1371- 1403 (53.51/29.72)	AGgsLPCPQFRPFIMEHVAQGLNALEPNFSGAA
 1405- 1426 (23.26/11.54)	AGghLSSSNSNP......SSGSQQLVPN.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     164.10|      53|     117|     255|     312|       9
---------------------------------------------------------------------------
  255-  312 (77.99/73.68)	LHELCVAlVMDTVLRQVQVLRQGRWKDaIRFELIFDDSAGQGgntTGVVQLAQDG.ELD
  375-  428 (86.11/61.64)	LDQSCID.VEKLLLRAIACNRHTRLLE.IQRELSKSVHICRG...SGDVILKREGaELD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     129.68|      44|     563|     700|     747|      11
---------------------------------------------------------------------------
  700-  747 (64.18/56.84)	TShQGIKAGVSSpkwEGVQQ..SQINNIVNVSAGLTSSS..NSMSLSNNLKG
 1266- 1313 (65.50/42.28)	TS.QGLLPNTSS...SNVMQpaSSAPALTAVMAQLGSHSlhSAAMLSAAGRG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.05|      13|      23|     906|     919|      13
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  906-  919 (20.59/17.80)	PLPRGLkSGTEQCK
  932-  944 (22.46/13.66)	PVSQAL.SSVLTCK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16645 with Med14 domain of Kingdom Viridiplantae
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