<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16644

Description cyclin-dependent kinase E-1
SequenceMGDGRGAGGGRPAWLQQYDLVGKIGEGTYGLVFLARTKHRRCCIAIKKFKQSKEGDGVSPTAIREIMLLREISHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHREKLNHQINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLYENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGVEVKATPNPFQLDQLDKIFKVLGHPTPEKWPTLVNLPYWQNDQQHIQGHKYDNPALHSYVHLAQKSPAYDLLSKMLEYDPRKRITAAQALEHEYFRMDPLPGRNALVPSQPGEKAVNYPARPVDTTTDFEGTISVQPSQPVSSGNAVAGSVAAASVVAPRQVPRPMPMVGMQRMPGAGMAAFNIASQAGMGGLNPGNISMQRGAAPAHQQQLRRKDPGMGLQNTGYPQQRRRF
Length463
PositionKinase
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.08
Grand average of hydropathy-0.351
Instability index40.61
Isoelectric point9.29
Molecular weight51716.83
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16644
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.64|      34|      42|     153|     189|       1
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  153-  189 (50.49/39.89)	LVMGEGEEHGVVKIADFGLarIYQA..PLKPLYEnGVVV
  198-  233 (56.15/33.58)	LLLGAKHYTSAVDMWAVGC..IFAEllTLKPLFQ.GVEV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.27|      24|      41|     328|     352|       2
---------------------------------------------------------------------------
  328-  346 (26.67/ 9.42)	......................D.........PLPGRNAL.VPSQPGEKAV
  347-  387 (24.69/11.93)	NYPaRPvdtttdfegtisvqpsQ.........PVSSGNAV.AGSVAAASVV
  391-  423 (28.91/10.95)	QVP.RP.................mpmvgmqrmPGAGMAAFnIASQAGMGGL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16644 with CDK8 domain of Kingdom Viridiplantae
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