<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16643

Description probable mediator of RNA polymerase II transcription subunit 26b isoform X1
SequenceMANSSASLDYWRKFFRSANSDIFEVLEQAILVAASDYPQEFRSRRDGIGEKLYTCLLPRCSGCDRVESRVSTEGGEEGDGSVKRDVEKESKVDSSNEVFEDLNRLVSSYSYDEAEALTEEIEEESQMFAEVLRIKEILANKHDQSDSVLFDSLRRLQLMELSVETLKATEIGRAVNGLRKHNSKQIRHLVRTLIDGWKVLVDEWVSATAAIADNSPASVNPSVVDEEEEGLPSPPLDEGALWATQTTSIQLSKFFDGMDDDGNLRNNGEFDKNREDGRRLPVNHETVRKQQPPCQPVVTEDRGQMRKQEPVMRQTKPQEASAPQAKPQRILRKESKPLSANSGPGRPAKLPSEQKAVDEMKPKQQDLSSVQRKPPVIPQDKSKYSEEALVRAKLEAAKRKLHEGYQQAENAKKQRTIQVMELHDIPKQSHHHRQPNMKPRNQFRSWANGRH
Length451
PositionUnknown
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.05
Grand average of hydropathy-0.918
Instability index59.22
Isoelectric point6.15
Molecular weight51173.65
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16643
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.07|      22|      24|       9|      31|       1
---------------------------------------------------------------------------
    9-   31 (35.51/25.54)	DYWRKfFRSANSDIFEVLEQAIL
   36-   57 (41.56/25.01)	DYPQE.FRSRRDGIGEKLYTCLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.71|      24|      24|     285|     308|       2
---------------------------------------------------------------------------
  284-  307 (43.98/24.90)	HETVRKQQPPCQPVVTEDRGQ..MRK
  308-  333 (36.73/19.72)	QEPVMRQTKPQEASAPQAKPQriLRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.62|      24|      24|     336|     359|       3
---------------------------------------------------------------------------
  336-  359 (40.47/21.71)	KPLSAN..SGPGRPAKLPSEQKAVDE
  361-  386 (37.15/19.39)	KPKQQDlsSVQRKPPVIPQDKSKYSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      28.86|       9|      24|     229|     241|       4
---------------------------------------------------------------------------
  229-  241 (11.00/14.19)	EGLPspplDEGAL
  256-  264 (17.86/ 8.28)	DGMD....DDGNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.09|      14|      24|     400|     413|       5
---------------------------------------------------------------------------
  400-  413 (23.14/14.99)	KLHEGYQQAENAKK
  421-  434 (25.95/17.66)	ELHDIPKQSHHHRQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.46|      15|      25|     151|     166|       6
---------------------------------------------------------------------------
  151-  166 (20.62/15.94)	DSLRRL...QLMELsVETL
  176-  193 (21.84/12.02)	NGLRKHnskQIRHL.VRTL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16643 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SKFFDGMDDDGNLRNNGEFDKNREDGRRLPVNHETVRKQQPPCQPVVTEDRGQMRKQEPVMRQTKPQEASAPQAKPQRILRKESKPLSANSGPGRPAKLPSEQKAVDEMKPKQQDLSSVQRKPPVIPQDKSKYSEEALVRAKLEAAKRKLHEGYQQAENAKKQRTIQVMELHDIPKQSHHHRQPNMKPRNQFRSWANGRH
252
451










Molecular Recognition Features






MoRF SequenceStartStop




1) LDYWRKFFR
2) LHDIPK
3) QAKPQRILRKESKPLSAN
4) QFRSWANGRH
8
422
324
442
16
427
341
451