<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16639

Description luminal-binding protein 5
SequenceMDRSMRNSGSAILLGILLSGCLFAFSIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAALNAERTIFDVKRLIGRKFEDKEVQRDIKLVPYKIVNKDGKPYIQVKIRDGEVKVFSPEEISAMILTKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNKALGKLRRECERAKRALSNQHQVRVEIESLYEGLDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKRQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPSKGVNPDEAVAYGAAVQGGILSGEGGEETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDNRMLGKFDLTGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVKEAEEFAEEDKKIKEKIDARNQLETYVYNMKNTINEKDKLADKLESEEKDKIDAALKDALEWLDDNQNAEKEDYDEKLKEVEAVCNPIISAVYQRSGGAPGGSSDDDDSHDEL
Length664
PositionUnknown
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.473
Instability index28.34
Isoelectric point5.13
Molecular weight73368.34
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16639
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.61|      18|      20|     582|     601|       2
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  582-  601 (22.96/17.42)	KntINE..KDKLA..DKLESEEKD
  602-  623 (17.65/ 6.75)	K..IDAalKDALEwlDDNQNAEKE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.30|      11|      27|     232|     242|       3
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  232-  242 (20.46/10.59)	LGGGTFDVSIL
  260-  270 (21.85/11.74)	LGGEDFDQRIM
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     205.14|      56|     193|     161|     231|       4
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  161-  217 (86.18/51.55)	KETAEAYLGKKIKDAVVT..VPAYFN..........................DAQ.RQATKDAGIIAGLNVARIINEPTaAAIAYG
  351-  404 (80.00/42.85)	KAMEDAGLEKRQIDEIVL..VGGSTR..........................IPKvQQLLKD..YFDGKEPSKGVN.PD.EAVAYG
  429-  500 (38.96/35.01)	...APLTLGIETVGGVMTklIPR..NtviptkksqvfttyqdqqttvsiqvfEGE.RSLTKDNRMLGKFDLTGIPPAP........
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.00|      17|      22|     501|     521|       5
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  501-  518 (26.00/26.89)	RGTPQIE.VTFEVDaNGIL
  525-  542 (25.00/10.71)	KGTGKSEkITITND.KGRL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.77|      14|     193|     218|     231|       6
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  218-  231 (25.62/17.24)	LDKKGGE..KNILVFD
  412-  427 (20.15/11.71)	LSGEGGEetKDILLLD
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.80|      12|      16|     313|     325|       9
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  313-  325 (16.41/16.15)	RVEIESLYEGLdF
  331-  342 (21.38/14.63)	RARFEELNNDL.F
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16639 with Med37 domain of Kingdom Viridiplantae
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