<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16636

Description LOW QUALITY PROTEIN: U-box domain-containing protein 34-like
SequenceMNVPPTSLLHLFEDDYSYYCSFFQDAIPSLPAPSPPSEIEMLNRKRKRVEEPAEADPNPLDGRKGSSSCRESGDSDSDTINSHAATSSGGGGGGPSPHHQRRLWVKERSRDWWDRCNHPDFPEAEFRRAFRMGRATFEFLCEELGAAVAKEDTTLRAAIPVRQRIAVCVSRLATGDPLRVVSKRFGLGISTCHKLVLEVCSAIKTVLMPKFLQWPDPAAAAAAARRFEALAGIPNVVGSMYTTHIPIIAPKVNVAAYFNRRHTERNQKTSYSITVQGVVDPDGVFTDVCIGWPGSLPDDQVLEKSALYQRGSGGLLQNQWIVGGAGYPLMDWVLVPYAQKNLTWTQHAFNEKVGEVQRVAKEAFARLKGRWGCLQKRTEVKLPDLPVVLGACCVLHNICEMRKEKLEPQLSYELVDDEMLPENGLRSVSAMQARDNIAHNLLHHGLAGTAFLYISFVIESKRHILCLKQGAALYRIFKVVEVYSDYVELLLHKGGDIALTLRWFWAGAADTSRRRMAGVAGDAAATVAIAVCGGGKSRRAVRWAAANLVPHAHSVLLLHVIPPVSYIPSPSGKRVPIERMEREVVEMYISDLKLKSQEVFVPFKRLCGTKNVETLVLDGENPAAALLRYVSDSGTKNLVLGSSAISWIRRIIKDPDVPTIILKSAPNSCNIFVVSRRKLTMKLAYQSVNDGLSTSMLIQTTSHKSFDRMRMNNTFDKQSILSSESNGISHISAQIDVGSHSQARSNSSSSTNARQNSEKAPLLPCTGGQGNLDNNTQTWRKYDVMASFKGIPFVISHSTKESEAPAEVVKLRKELQNTLAMYNRACEDLVHAKKKVHLLSAECSEEAKKVKDALEREETLKQIAAEEKAKHSEVIKEVEEARQLLAKEALDRHKAEIVASNMSSEKSRVVHALLSNDKRCRRYSRNEIEVATDNFCDAKKIGEGSYGDVYKCNLDHTPVAVKVLRQDAGDKKEEFLREVEILSQLRHPHMVLLLGVCPESGCLVYEYMENRSLEDQLFYREGKQPLPWFIRFRIIFEVACGLAFLHGTKPEPIVHRDLKPGNILLDRNYVSKIGDVGLAKLLPDIVPDGLTEYRETILAGTLYYMDPEYQRTGTVRPKSDLYALGIIALQLLTAKHPKGLILNVENAIRGGSFPDVLDKSISDWPLVEAEKLAKLALKCSRLRCRDRPDLELEVLPELEELIYMANVCFKLRQCNVYAPSHYLCPILQEVMDDPYVAADGYTYECRAIKAWLGKHQISPVTKLKLSHTSILPNHSLRSAIQEWRSHAAFLTS
Length1292
PositionTail
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.268
Instability index49.72
Isoelectric point8.59
Molecular weight144225.00
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16636
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.59|      31|      33|     845|     876|       1
---------------------------------------------------------------------------
  845-  876 (43.58/33.96)	EEAKKV..KDALEREETlKQIAAEEKAKHSEVIK
  879-  911 (45.01/30.20)	EEARQLlaKEALDRHKA.EIVASNMSSEKSRVVH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     207.53|      68|     375|     227|     315|       2
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  233-  305 (112.33/87.69)	IPNVVGSMYTTH.IPIIAPKV.NVAAYFNRRHTERNQKTSYS...ITVQGVV..DPDGVFTDV.cigWPGSLPDdqVLEKS
 1082- 1160 (95.20/40.18)	LPDIVPDGLTEYrETILAGTLyYMDPEYQRTGTVRPKSDLYAlgiIALQLLTakHPKGLILNVenaiRGGSFPD..VLDKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     147.60|      43|      55|     105|     148|       3
---------------------------------------------------------------------------
  105-  148 (75.37/60.82)	VKERSRDWWDRCNHPDfPEAEFRRAFRMGRATFEFLCEELGAAV
  161-  203 (72.23/52.47)	VRQRIAVCVSRLATGD.PLRVVSKRFGLGISTCHKLVLEVCSAI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.13|      19|     375|     617|     652|       4
---------------------------------------------------------------------------
  588-  607 (29.22/23.55)	YISD.....LKLKSQEVfVPFKRLC
  629-  652 (26.92/16.67)	YVSDsgtknLVLGSSAI.SWIRRII
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.75|      32|     848|     405|     438|       6
---------------------------------------------------------------------------
  405-  438 (50.14/40.31)	KLEPQLSYELVDDEMLPENGLRsvSAMQA.RDNIA
 1256- 1288 (49.61/33.31)	QISPVTKLKLSHTSILPNHSLR..SAIQEwRSHAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.46|      30|      34|     686|     718|       7
---------------------------------------------------------------------------
  686-  718 (48.59/43.80)	QSVNDGLS.TSMLIQTTSHksfDRMRMNN...TFDKQ
  722-  755 (40.87/27.82)	SSESNGIShISAQIDVGSH...SQARSNSsssTNARQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16636 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LPAPSPPSEIEMLNRKRKRVEEPAEADPNPLDGRKGSSSCRESGDSDSDTINSHAATSSGGGGGGPSPHHQR
2) SHSQARSNSSSSTNARQNSEKAPLLPCTGGQG
30
739
101
770










Molecular Recognition Features






MoRF SequenceStartStop




1) IEMLNRKR
39
46