<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16635

Description cyclin-C1-1-like
SequenceMAANFWTSSHHKQLLDPDGVDVVHPLDKEKGLTQEEFRLIKIHMTFYILKLAQQVKVRQRVMATAVTYLRRVYTRRSMTEYDPRLVAPTCLYLASKAEESTVQARLLVFYIKKMCSDEKYRFEIKDILEMEMKLLEALDYYLVVYHPYRPLLQLLQDAGITDLTQVAWGLVNDTYKMDLILIYPPYMIALACIYIGSVLKDKETTAWFEELRVDMNAVKNISMEILDFYDYFTLAGGEHQKGIPEERINPALSKLATKA
Length259
PositionKinase
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.11
Grand average of hydropathy-0.100
Instability index43.43
Isoelectric point6.33
Molecular weight30165.90
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16635
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.39|      37|     137|      13|      52|       1
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   13-   52 (54.49/47.91)	QLLDPDGVDVVHPLdkEKGLTQEEFR..LIKIHMTfYILKLA
  153-  191 (59.90/40.29)	QLLQDAGITDLTQV..AWGLVNDTYKmdLILIYPP.YMIALA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.62|      10|      26|      60|      69|       2
---------------------------------------------------------------------------
   60-   69 (17.05/ 9.64)	RVMATAVTYL
   84-   93 (18.57/11.00)	RLVAPTCLYL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16635 with CycC domain of Kingdom Viridiplantae
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