<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16634

Description mediator of RNA polymerase II transcription subunit 25
SequenceMAEKQLIVAVEGTAALGPYWSIILSDYLDKIIRCFYGNELTGQKLSGAHPEFALVVFNTHGPHSSFIVQHSGWTKDLDVFFQWLSGIPFSGGGFSEAAIAEGLAEALMMFPFTPNVSQSHQNLEAQKHCILVAASNPYPLPTPVYRPAIQSLEHPENAEAQTEAGLADAETVAKSFGQCCVSLSVISPKHLPKLRSIYNAGKRNPRAADPAVDHVKNPQFLVLLSESFMEARAALSRPLIGGLTSNQGVVKLDGASATPIPGPSTNNPAVNGSMINRPPVTVGNIPTATVKMEPTTVSSMVSGPAFPHMQSISNVATQGVGNLQNSAPSPTSQEMGANSDGVQEIKPLINPISQSLRPVGPTPANVSILNNLSQHRQMMTSASIAGASSIGLQTMGATPMAMHMSNMISTGMVSSAMSGITSVAGSGPLMATAQVAQNSALGSFASATSNMSGNSNIGISPALANLQGNIGMGTSVPGVGQGNLASSTQIGQGGISMNQNTMNNLGPTGISSGPGTMIPTPGMSQQAGLHSLGVTNNSTMNMPVSQHPSNVQQAQSKYVKIWEGSLSGQRQGQPVFICKLEGYRNASASETLAADWPQTMQIVRLIAQEHMSNKQYGGKVDYLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGVLFPGDMVVFKPQVPSQQQQQLLLQQQQLQPQAQSHQHLQQQKLQQQQLQQQAHPHQHLQAQQLQQQAQPQQQQMVGSGMGQSQQQMVGSGMGQQQMVGQQQQMVGSGLGQTFVPGHSRSQIMTQGKMPTQGPGNMSGGGFLP
Length809
PositionUnknown
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.05
Grand average of hydropathy-0.220
Instability index47.15
Isoelectric point8.61
Molecular weight85532.22
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16634
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     161.80|      26|      26|     723|     748|       1
---------------------------------------------------------------------------
  703-  720 (34.51/10.67)	QHLQQQKL.QQQ.QLQQ..QA.......H
  723-  748 (54.87/21.01)	QHLQAQQL.QQQAQPQQ..QQMVGSGMGQ
  751-  777 (43.72/15.34)	QQMVGSGMgQQQMVGQQ..QQMVGSGLGQ
  782-  806 (28.69/ 7.71)	GHSRSQIM.TQGKMPTQgpGNMSGGG...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     268.69|      50|      50|     434|     483|       2
---------------------------------------------------------------------------
  324-  381 (30.22/ 7.34)	...QNSA......PSPTSQEMGANSdgvqeikplinpisqslrpVGPTPAnvsiLNNLSQ......HRQMM.........TS........
  383-  428 (43.85/13.80)	...........SIAGASS..IGLQT...................MGATPM....AMHMSN......MISTGmvssamsgiTSV..AGSGP
  434-  483 (88.95/35.14)	QVAQNSALG..SFASATSNMSGNSN...................IGISPA....LANLQG......NIGMG.........TSVPGVGQGN
  489-  522 (45.92/14.77)	QIGQ....GgiSMNQNTMNNLGPT.....................GISS...................GPG.........TMIPTPG...
  524-  573 (59.74/21.31)	..SQQAGLH..SL.GVTNNSTMNMP...................VSQHP......SNVQQaqskyvKIWEG..........SLSGQRQGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.23|      23|      50|     616|     651|       3
---------------------------------------------------------------------------
  616-  642 (32.23/35.32)	YGGkvDYLVFR....TLNQHGFLgqLQEKKL
  669-  695 (36.00/11.42)	FPG..DMVVFKpqvpSQQQQQLL..LQQQQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     261.24|      62|      66|     147|     212|       4
---------------------------------------------------------------------------
   96-  145 (30.04/10.98)	............EAAIAEGLAEAlmmfpftPNVSQSHqnleaQKHCILVAASNPYPLPT..PVY..............
  147-  212 (98.97/66.02)	PAIQSLEHPENAEAQTEAGLADA.......ETVAKSF.....GQCCVSLSVISPKHLPKLRSIYNagkrNPRAADPAV
  218-  270 (80.79/45.57)	PQFLVLLSESFMEAR..AALSRP.......LIGGLTS.....NQGVVKLDGASATPIP...........GPSTNNPAV
  278-  314 (51.43/25.12)	PPVTVGNIP.............T.......ATV..KM.....EPTTVS.SMVSGPAFPHMQSISN.............
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16634 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MVGSGLGQTFVPGHSRSQIMTQGKMPTQGPGNMSGGGFLP
2) PHMQSISNVATQGVGNLQNSAPSPTSQEMGANSDGVQEIKPLINPISQSLR
3) QSHQHLQQQKLQQQQLQQQAHPHQHLQAQQLQQQAQPQQQQMVGSGMGQSQQQMVGSGMGQQQMVGQQQ
4) STQIGQGGISMNQNTMNNLGPTGISSGPGTMIPTPGMSQQAGLHSLGVTNNSTMNMPVSQHPS
5) VKLDGASATPIPGPSTNNPAVNGSMINRPPVTVGNIPTATVKMEPTTVSSMVSGP
770
307
700
487
250
809
357
768
549
304










Molecular Recognition Features






MoRF SequenceStartStop




NANANA