<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16633

Description LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 33A-like
SequenceMSPRRRGTGSTSELMAVAVAVGSPWDGVAEFTKAAQEKGCDPAAWVAHVSSALAAAGAPAPSPELSHLLVSHLCWGNNVPLAWKYVERALAANLASPMLLLALLSTRAIPSRRSRPAAYRLYMELLRRHAFSFTSQINGSNFKKIMVSIDDVLHLSRTFGIQACEPGVLVVEYVLSIVWQLLDATLDDEGLLELIPDKKVKWAARPQEMEIDGEGICDEKRNEHNEKLQKINSIMAIELIAHFLQQKVVSSLLSLARRNMPSHWGAFTQSLSLLATNSSALRNSTITVESVQRLILDNCNKFGRQCKPSQHQEFCTLISSGSLKFPGGYCHGFSHSALWIPIDLYLEDCIDLSVAATNAIEILSGLVKALQAANGTSWHDAFLGLWMSSLRLVQREREPHEGPVPHLDTRLCMLLSITPLSIADIIEEEEVSLTDEAENNNQWREKTVGGKCLEELVSSLQVLGDYVSLLVPPPSVISAANQAAAKAMMFVSGLSVGSGYLESISLNDKTINCTGNMWHLIVEACISRNLLDTSAYYWPGYINGRINQIPPTMPSQVPGWSALMNGAPLTSSMVNALVATPASSLAEVEKIFEIAIRGSDNDKVSAATILCGASLIRGWNIQEHTVRFVVKLLSPPVPVDYSGSESHLISHSPMLNVVLTGISSVDCVQVFSFHGLVPELAGSLMAICEVFGSCVPIVSWPLSTGEEITAHSVFSNAFILLLRLWKFNHPPLEYCIMGDGAPVGSQLTPEYLLLLRNAKILSPSNMTKNRNSQRRQPSSISPSSMHPIFVDSFPKLKIWYRQHQACLASTLSGLVHGTPVHQNVDALLNMMFRKIKRGSNQSIGSGTSGSSSLSTSSGPGSDDSSVRPKLPAWDIMEAVPFVVDAALTACSHGKLSPRELATGLKDLADFLPASLATIVSYFSAEVTRGVWKPAFMNGTDWPSPAANVSTVEENIKKIVAATGVDVPSLVAGGSSSAALPLPLAAFASLTITYKLDKASERFLNLAGPALESLAASCPWPSMPIVAALWTQKVRRWTDFLTFSASRTVFHHNNDAVVQLLRSCFTAALGPPSSPISSNGGVGGLLGHGFGSHFTGGLSPVAPGVLYLRVYRCIKDIILLTEEILSLLMLSVKEIAASIVSKERSDKLKKAKCGMRYGQVSLASAMMRVKVAAALGATFVWLSGGSGLIQSLIQEMLPSWFISVHDLDQEGGTGGIVYKLVGYALAYFAVLCGMFAWGINSTPVSKRRPRVIESHMEFIASAFDGKISLGCDWALWRAYVSGFLGLVVECAPCWVLEVELEVLKRLSRGLRQWKEDDLALALLQMGKVEAMGAAAEMILASE
Length1341
PositionTail
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy0.171
Instability index45.93
Isoelectric point6.63
Molecular weight145025.90
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16633
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     671.77|     221|     371|     225|     595|       1
---------------------------------------------------------------------------
  225-  499 (327.77/321.18)	NEKLQKINSIMAIELIAHF.LQQKVVSSLLSLARRNMPSHwgaFTQSLSLLATNSSALRNSTITVESVQRL...............ILDNCNKFGRqCKPSqhqefctlissgsLKFPGGYCHGF.SHS..........ALWIPIDLYLEDCIdlsvaatnaieilsglvKALQAANGTSWHDAFLGLWMSSLRL....VQREREPHEGPVPhldtrlcmllSITPLSIADIieeeevsLTDEAENNNQWREKtvGGKCLEELVSSLqVLGDYV.....SLL.VPPPSVISAANQAAAKAMMFVSGLSVGSG
  601-  858 (344.00/361.83)	NDKVSAATILCGASLIRGWnIQEHTVRFVVKLLSPPVPVD...YSGSESHLISHSPMLNVVLTGISSVDCVqvfsfhglvpelagsLMAICEVFGS.CVPI.............VSWPLSTGEEItAHSvfsnafilllRLWKFNHPPLEYCI.................MGDGAPVGSQLTPEYLLLLRNAKILspsnMTKNRNSQRRQPS..........SISPSSMHPI.......FVDSFPKLKIWYRQ..HQACLASTLSGL.VHGTPVhqnvdALLnMMFRKIKRGSNQSIGSGTSGSSSLSTSSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     205.57|      64|     957|      55|     169|       2
---------------------------------------------------------------------------
   87-  159 (90.04/113.47)	ERALaaNLASPMlLLALLSTRAIPsrrSRPAAYRLYMELLRRHAFSFTSQINGSNFKKimvSIDDVLHLSRTF
 1000- 1063 (115.53/60.50)	ERFL..NLAGPA.LESLAASCPWP...SMPIVAALWTQKVRRWTDFLTFSASRTVFHH...NNDAVVQLLRSC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.45|      18|     370|     560|     590|       4
---------------------------------------------------------------------------
  562-  590 (23.76/36.67)	ALMNGA..PltssmvnalvaTPASSLAEVEK
  934-  953 (28.69/10.96)	AFMNGTdwP...........SPAANVSTVEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     124.32|      34|    1229|      39|      84|       5
---------------------------------------------------------------------------
   39-   84 (61.19/56.14)	GCDPAAWVAHVSSALAAAGAPAPspelshllvshlCWGNNVPL...........AWK
 1269- 1313 (63.13/36.08)	GCDWALWRAYVSGFLGLVVECAP............CWVLEVELevlkrlsrglrQWK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16633 with Med33 domain of Kingdom Viridiplantae
Unable to open file!