<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16631

Description mediator of RNA polymerase II transcription subunit 8
SequenceMEATGGAVPPQGQQPPPPAAGDAAAQPPPKAERLNAALQQQLNLESVKTRAIGLFKAISRILEDFDAYARSNTSPKWQDILGQFSMVNMELFNIVEDIKKVSKAFVVYPRNVNAENAAILPVMLSSKLLPEMEAEDNAKREQLLYGLSNLPVHMQIEKLKARIDMIETACEAAEKVIADARKAYGLGSRQGPTLVPTSDKVQAAKIQEQESLLRAAVNFGEGLRIPADQRHLPSSLPSHLVDVLTCGDGAQNFGDNSGVYTKNTPSFSSNTVSTQGAVMQTPGTQLIGRPAPSPSGVTGTASFDNASTPPLPYANSPRSSTNMMNTPSPQQQTQQQQQRQKMMQLPQQHQQQLHAQQQLRQSPSQGVLGQNTMSQLNDIQGHTQQKFQQVPGQHQMQYSQQLPQQQFQNRQLQSPHMQHNMTQNQINHASQLRNQLSQFSAVNSALFNAAQSSPNSQMLTNMSATMQSQSLLPRMQFYGMAGGHPQRNHPSQIINDQMFGMNSSNPANMVAMQQQQHGTQGGFGNIPANNQNMQPGMVNFPQQRQQNQQ
Length549
PositionHead
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.05
Grand average of hydropathy-0.685
Instability index60.30
Isoelectric point9.10
Molecular weight60263.99
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16631
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     232.12|      33|      33|     380|     412|       2
---------------------------------------------------------------------------
  341-  359 (26.76/ 6.03)	......KM.MQLPQQH.......Q.....Q.QLH......AQQ....QL
  380-  412 (63.22/25.22)	QGHTQQKF.QQVPGQH.......Q.MQYSQ.QLP......QQQFQNRQL
  414-  442 (42.68/14.40)	SPHMQHNM.....TQN.......Q.INHAS.QLR......NQLSQFSAV
  443-  480 (36.75/11.29)	NSALFNAA.QSSPNSQmltnmsaT.MQSQS.LLP......RMQFYG..M
  482-  518 (32.10/ 8.84)	GGHPQRNHpSQIINDQ.......M.FGMNS.SNPanmvamQQQQHG...
  519-  549 (30.61/ 8.06)	...TQGGF.GNIPANN.......QnMQPGMvNFP......QQRQQNQQ.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      84.04|      28|      33|     235|     267|       3
---------------------------------------------------------------------------
  216-  247 (19.65/20.45)	..AVNFG....E..GLRIpadqRHLP.......sSLPshlvdVLTCG
  248-  276 (43.02/27.04)	DGAQNFG....DNSGVYT....KNTPSF..........ssntVSTQG
  282-  312 (21.38/ 8.06)	PGTQLIGrpapSPSGV......TGTASFdnastpPLP..........
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16631 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MEATGGAVPPQGQQPPPPAAGDAAAQPPPKAERLNAALQ
2) NFGDNSGVYTKNTPSFSSNTVSTQGAVMQTPGTQLIGRPAPSPSGVTGTASFDNASTPPLPYANSPRSSTNMMNTPSPQQQTQQQQQRQKMMQLPQQHQQQLHAQQQLRQSPSQGVLGQNTMSQLNDIQGHTQQKFQQVPGQHQMQYSQQLPQQQFQNRQLQSPHMQHNMTQNQINHASQLRNQ
3) SLLPRMQFYGMAGGHPQRNHPSQIINDQMFGMNSSNPANMVAMQQQQHGTQGGFGNIPANNQNMQPGMVNFPQQRQQNQQ
1
252
470
39
435
549










Molecular Recognition Features






MoRF SequenceStartStop




NANANA