<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16628

Description probable mediator of RNA polymerase II transcription subunit 26b
SequenceMASNSYSLDYWRKLFRSTNTNIFEVVENAVLIAATDYPTEFAHRRDELVERIFTCRLDYRSWLPSGGEENDEKEREEERREHKVGNELRNGEAPSNEVEEASRVVSEITRIKNVLKNWREESESVLLESLQRLQSMEISIQILKETKIGRTVKHLMRHESEEIQLLAQALIDGWRNVVKEWANEGINSEDPAPDSASKPANVEEGGLAFPPWDEAALLATQTTSMELTRIFDGIDDNGNIENCGRSQENGRGRPPKGEGEFRKREASSIQMRPLEACNRLPEPHYYGEKRRSETSRQIQPLDAPRPPKPYAEGKRRMQDSSPAQQRSLEAHIRLPKLHDLQGNNHKHIEDDSEPSAVPGRPPRTAFEHKAGAETKFQHNQGHSQLPKTPPSVVQAAPQQYDDWFLAQKLETAKRKLQGGYQQAENAKRQRTIQMVEQSNMPKHSQNPRQPSPNVRDRIMKKLVKRH
Length466
PositionUnknown
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-1.069
Instability index68.21
Isoelectric point6.74
Molecular weight53500.06
Publications









Function






Annotated function


ECO:0000256	RuleBase:RU364145

GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats
>MDP16628
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.99|      25|      41|     203|     227|       1
---------------------------------------------------------------------------
  203-  227 (42.96/24.93)	EEGGLAFPPWDEAALLATQTTSMEL
  247-  271 (44.03/25.72)	QENGRGRPPKGEGEFRKREASSIQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     230.26|      53|      53|     299|     351|       2
---------------------------------------------------------------------------
  272-  297 (27.96/ 9.54)	................................RPLEACNRLPEPHY..YGEKRRSETSRQ
  299-  351 (92.36/46.52)	QPLD.AP.RPPK...PYAEGKRRMQDSSPAQQRSLEAHIRLPKLHD..LQGNNHKHIEDD
  353-  402 (70.52/33.98)	EPSA.VPgRPPR...TAFEHKAGAETKFQHNQ....GHSQLPKTPPsvVQAAPQQY..DD
  407-  448 (39.43/16.13)	QKLEtAK.RKLQggyQQAENAKRQRTIQMVEQSNMPKHSQNPR.................
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16628 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ELTRIFDGIDDNGNIENCGRSQENGRGRPPKGEGEFRKREASSIQMRPLEACNRLPEPHYYGEKRRSETSRQIQPLDAPRPPKPYAEGKRRMQDSSPAQQRSLEAHIRLPKLHDLQGNNHKHIEDDSEPSAVPGRPPRTAFEHKAGAETKFQHNQGHSQLPKTPPSVVQAAPQQYDDWFLAQK
2) GGEENDEKEREEERREHKVGNELRNGEAPSNEVEEAS
3) TAKRKLQGGYQQAENAKRQRTIQMVEQSNMPKHSQNPRQPSPNVRDRIMKKLVKRH
226
66
411
408
102
466










Molecular Recognition Features






MoRF SequenceStartStop




1) DWFLAQKLET
2) HKAGA
3) LEAHIRLPKLH
4) RQPSPNVRDRIMKKLVKRH
5) YWRKLFR
402
368
328
448
10
411
372
338
466
16