<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16628

Description probable mediator of RNA polymerase II transcription subunit 26b
SequenceMASNSYSLDYWRKLFRSTNTNIFEVVENAVLIAATDYPTEFAHRRDELVERIFTCRLDYRSWLPSGGEENDEKEREEERREHKVGNELRNGEAPSNEVEEASRVVSEITRIKNVLKNWREESESVLLESLQRLQSMEISIQILKETKIGRTVKHLMRHESEEIQLLAQALIDGWRNVVKEWANEGINSEDPAPDSASKPANVEEGGLAFPPWDEAALLATQTTSMELTRIFDGIDDNGNIENCGRSQENGRGRPPKGEGEFRKREASSIQMRPLEACNRLPEPHYYGEKRRSETSRQIQPLDAPRPPKPYAEGKRRMQDSSPAQQRSLEAHIRLPKLHDLQGNNHKHIEDDSEPSAVPGRPPRTAFEHKAGAETKFQHNQGHSQLPKTPPSVVQAAPQQYDDWFLAQKLETAKRKLQGGYQQAENAKRQRTIQMVEQSNMPKHSQNPRQPSPNVRDRIMKKLVKRH
Length466
PositionUnknown
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-1.069
Instability index68.21
Isoelectric point6.74
Molecular weight53500.06
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16628
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.99|      25|      41|     203|     227|       1
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  203-  227 (42.96/24.93)	EEGGLAFPPWDEAALLATQTTSMEL
  247-  271 (44.03/25.72)	QENGRGRPPKGEGEFRKREASSIQM
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     230.26|      53|      53|     299|     351|       2
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  272-  297 (27.96/ 9.54)	................................RPLEACNRLPEPHY..YGEKRRSETSRQ
  299-  351 (92.36/46.52)	QPLD.AP.RPPK...PYAEGKRRMQDSSPAQQRSLEAHIRLPKLHD..LQGNNHKHIEDD
  353-  402 (70.52/33.98)	EPSA.VPgRPPR...TAFEHKAGAETKFQHNQ....GHSQLPKTPPsvVQAAPQQY..DD
  407-  448 (39.43/16.13)	QKLEtAK.RKLQggyQQAENAKRQRTIQMVEQSNMPKHSQNPR.................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16628 with Med26 domain of Kingdom Viridiplantae
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