<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16626

Description Mediator of RNA polymerase II transcription subunit 14
SequenceMAEELGQQTVEFSSLVHRAAEESYLSLKELVERSKAPEERSDTEKKIDLLKFIVKTRQRMLRLHVLAKWCQQVPLVHYCQQLAATLSSHDTCFTQTADSLFYMHEGLQQARAPIFDVPSAIEVVLAGGYRRLPKCIEDLGIQSTLSKDEQKPALKKLDTLLRSKLLEISLPKEISDVTVSDGTVVLHVDGEFKVFLTVGYRGHLSLWRILHLELLVGEKNGPIKLEELRRYALGDDLERRMAVAENPFMVLYTVLHELCTALVMDTVLRQVHVLRQGRWRDAIRFELISDGSAGQGGNNSIVQLAQDGELDSTGLKIPGLKIFYWLDFDKITGGSDTGSTPFIKIEPGQDLQIKCQHSSFVLDPLTDREAKFSLNQSCIDVEKLLLRAIACNRHTHLLEIQRELCKSVQIFRGSGDVILKHEGAELETELRKRDNKHSLEDYCGDEVLRVRAYGASYITLGINIRNGRFLLQSSKNVLAPSALLDGEESLNQGIVTATEVFMSLRSKSILHLFASTGKFLGLKVYDQSSTNIKIPKSILHGLDLLLMGFPQFGNSYYLLMELDKDIKPVFNLLETQTDAGGKSHSNSDANEVIRFNKIDISQMRMVEDELNMSLFDWDKLHALPSMGACNQISEHDLLPEFGLEPGLQLPACSQSSFSSVVDEVFEFDKATSGPPFPIMSHLSASYNMSPLSHLGPLPTSHQGIKAGVSSPKWEGGLQQSQINNIAKVSAGLTSSSNSIFFSNNLKGLIHNSTTNSLSSSSPARNSSIQKLSASKSDQDLSCLKSPRSGEVGQYSSMDEDQTRLVNESPKELGMVDGSRSSQLLPPLRTTGPRLLVQSTSSNNFKSSSTGHLVGSVKDNRYSSSMVAYTCQTAEPDISSTSGYYDGINKHKRKSTKRSLSDFLTLIPSFQRLKSSTKQCKRRKISESVHCHPTASHALSSVRTCRSSGYMYGNLLAEPNHGITPSNIYVSVLLHVVRHYSLCIKHAQLTSQMDALDIPYVEEVGLRTPSSNLWLRVPFAKNDSWQHICLHLGKPGSMCWDVKINDPHFRELWELHKGSTSTLWGASVRIANTSEVDSHIHYDPEGVVLSYRTIEADSIQRLVSDLRRLSNARLFACGMRKLIGVKDNDKLDDSNTNSETKLQSVTKRTGEAADKLSEQMRKTFKIEAVGLMSLWFSYVSMPVIVHFVVEWEAGKEGCRMHVSPDQLWPHTKFLEDFVNGAEVASFLDCIRLTAGPLVALGGAIRPARMPMPVPPNHSPLPKQNNFVPSQGLLPNTLSSNVIQPASSAPAPTAVMAQLGSHNLHSAAMLSAAGRGGPGLVPSSLLPFDVSVVLRGPYWIRIIYRKKFAVDMRCFAGDQVWLQPATPPKGGPAAGGSLPCPQFRPFIMEHVAQGLNALEPSFSGVAHSGGHLSSSNSNPGSGSQTPAPNATRLNVSASSGMARTPVVGSQVAGSLSRVSNAILASSGLASGISGVPLRISPGTGFPVHVKGELNTAFIGLGDDGGYGGGWVPLAALKKVLRGILKYLGVLWLFAQLPDLLKEILGSILKENEGALLNLDQEQPALRFFVGGYVFAVSVHRVQLLLQVLSVKRFHHQQQQQQTQTNTQEELAPNEINEICDYFSRRVASEPYDASRVASFITLLTLPVSVLREFLKLIYWKKGLSQAHGGDIATAQRARIELCLENHSGSVLDENSESNTASKSNIHHDRAHNSVEFALTFVLDPAHIPHMNAAGGAAWLPYCVSVRLKYSFGENTYISFLGMDGSHGGRACWLRFEDWEKCKQRVARTEENANGNSAGDVSQGRLRLVAETVQRKLDVSLQQLRDGALSSGSTAS
Length1833
PositionTail
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.217
Instability index49.16
Isoelectric point7.86
Molecular weight201455.17
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16626
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     357.43|     123|     133|    1245|    1377|       1
---------------------------------------------------------------------------
 1197- 1297 (74.03/43.70)	...........................................................CrmhVSPDQLW..PHTkfledfvngaevasfldciRLTA..GPlvALGGAI.rPARMPMPVPPNHSPLpkqNNFVPS.QGLL..PNTLSSNVIQPASSA..PAPTAvmAQL
 1298- 1431 (197.93/115.47)	GSHNLHSAAMLSA..AG...RGGPGLVPSSLLPFDVSVVlrgPywIRIIYRKKFAVDMRC...FAGDQVWLQPAT...................PPKG..GP..AAGGSLPcPQFRPFIMEHVAQGL...NALEPSfSGVAhsGGHLSSSNSNPGSGSqtPAPNA..TRL
 1435- 1512 (85.48/39.02)	ASSGMARTPVVGSqvAGslsRVSNAILASSGLASGISGV...P..LRISPGTGFPVHVK......GE...LNTAF...................IGLGddGG..YGGGWVP.LA........................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.20|      23|     136|    1035|    1057|       3
---------------------------------------------------------------------------
 1035- 1057 (47.81/30.40)	GSMC.WDVKINDP...HFRELWELHKG
 1169- 1195 (36.39/21.33)	GLMSlWFSYVSMPvivHFVVEWEAGKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.83|      14|     134|     366|     379|      11
---------------------------------------------------------------------------
  366-  379 (24.99/17.74)	TDREAKFSLNQSCI
  496-  509 (21.84/14.41)	TATEVFMSLRSKSI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16626 with Med14 domain of Kingdom Viridiplantae
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