<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16624

Description U-box domain-containing protein 35-like
SequenceMKDAESASLVAVAIDDDRNSQHALKWAADHVLTRGQIFYLLHVRRKIPSIQTPIGQQLSISEVNDGVASSCLERMDFQTKELLLPFQCFCNRSGLQFKEVILDDTDVPKAIVDFIADRIIDKLIFGASSRNALIRSFKPADVPTTVSKTAPEFCSIYVISKGKLSSTRPATRPITQRPACEFETDSARNQFQSIKSEPDSRYHTGAPARFHPAAIGYGGENGSFERSFEARISKKISRDSHARGCLDFSYQSAASCPSPSRTSIDQSNTYVPPQFCLTGEPQSFMSNASSEYSFHSFHDEQQKSLVSNKNTSAYCSSGSGSSRYERSSWILKEESSSLSDHSVEDIKAKMRRLKFEPRQMKDMSEDTCKEANYGKADGALRMEETRLAGDMRPHMAEKEQNSKALLQRNFSDCFHSNIRYRRYTVEEIQKATDNFLDALKIGEGGYGPVYKCNLDHTVVAIKILRSDPTQGMKQFHQEIEVLSCIRHPNMVLLMGACPEYGCLVYEHMANGSLEDRLFCQNGTRPLSWQLRFKIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDQNFVSKIADVGLARLIPPAAGLAITQYCMTAAAGTFCYIDPEYQTTGLLGVKSDIYALGIILLQLITAQPPMGLAHIVENALENGTLGDLLDPNVTDWPMEETVKLAQLALKCAELRRKDRPDLAHVILPELNRLRAVAASAEGSLRYHCQPRYGSFRLPC
Length727
PositionTail
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.08
Grand average of hydropathy-0.356
Instability index42.94
Isoelectric point7.03
Molecular weight81092.36
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16624
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.28|      16|      20|     275|     293|       1
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  275-  292 (26.12/27.20)	FclTGEPQ.SFMSN.ASSEY
  297-  314 (21.16/ 7.91)	F..HDEQQkSLVSNkNTSAY
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      56.47|      11|      26|     169|     179|       2
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  139-  150 (14.21/ 6.13)	PADVPTTvSKTA
  169-  179 (21.35/12.93)	PATRPIT.QRPA
  198-  208 (20.90/12.50)	PDSRYHT.GAPA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.83|      21|      26|     356|     376|       3
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  356-  376 (37.80/23.95)	EPRQMKDMSEDTCKEANYGKA
  384-  404 (36.03/22.51)	ETRLAGDMRPHMAEKEQNSKA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.10|      19|      20|     222|     240|       4
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  222-  240 (31.82/21.49)	GSFERSFEARIS.KKISRDS
  244-  263 (30.28/20.06)	GCLDFSYQSAAScPSPSRTS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.39|      15|      26|     574|     588|       6
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  574-  588 (26.06/15.01)	ADVGLARLIPP...AAGL
  597-  614 (23.34/12.75)	AAAGTFCYIDPeyqTTGL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16624 with Med32 domain of Kingdom Viridiplantae
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