<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16620

Description heat shock cognate 70 kDa protein 2-like
SequenceMAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLVGDAAKNQVAMNPTNTVFDAKRLIGRRFSDTSVQSDMRLWPFKVIPGPGDKPLIVVQYKGEEKQFAAEEISSMVLMKMREIAEAYLGSSIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKAASVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKRSVDEVVLVGGSTRIPRVQQLLQDFLNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQINVCFDMDANGILNVSAEDKTTSQKNKITITNDKGRLSKEEIEKMVQEAEKYKGEDEEHKKKVEAKNALENYAYNMRNTIRDEKIASKLPAADKKKIEDAVEQAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGAGADAAGGMDEDGPSAGGSDAGPKIEEVD
Length648
PositionUnknown
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.431
Instability index34.33
Isoelectric point5.12
Molecular weight71179.85
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16620
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     150.46|      50|      74|     412|     466|       1
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  412-  466 (75.22/71.93)	AGGVMTVLIPRNTTipTKKEQVFSTysdNQPGVLIQ......VYEGERTRTRDNNLLGKFE
  488-  543 (75.24/54.78)	ANGILNVSAEDKTT..SQKNKITIT...NDKGRLSKeeiekmVQEAEKYKGEDEEHKKKVE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.01|      12|      74|     220|     258|       2
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  206-  217 (21.16/22.02)	LGGGTFDVSLLT
  234-  245 (22.85/19.41)	LGGEDFDNRMVN
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.66|      18|      21|      38|      55|       3
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   16-   33 (18.75/ 9.99)	....TTYSCVGVWQHDRveIIA
   38-   55 (31.72/21.78)	NR..TTPSYVAFTDTER..LVG
   60-   78 (24.19/14.94)	NQvaMNPTNTVF.DAKR..LIG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.06|      38|     189|     159|     200|       4
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  159-  200 (50.84/45.97)	RQATKDagVIAGLNVMRIINePTaAAIAYGLDKKAASV.GEKN
  353-  391 (62.22/39.26)	QQLLQD..FLNGKELCKNIN.PD.EAVAYGAAVQAAILsGEGN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16620 with Med37 domain of Kingdom Viridiplantae
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