<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16619

Description heat shock cognate 70 kDa protein 2
SequenceMAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDASVQSDVKLWPFKVVAGPGDKPMIVVQYKGEEKQFAAEEISSMVLIKMKETAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKAGSVGEKNILIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHEVVLVGGSTRIPRVQQLLQDLFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQDAEKYKSEDEEHKKKVEAKNTLENYAYNMRNTIKDDKIASKLPAADKKKIEDAIEQAIQWLDGNQLAEADEFEDKMKELESVCNPIIAKMYEGAGADMAGGMDDDGPSAGGGSGAGPKIEEVD
Length649
PositionUnknown
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.421
Instability index35.17
Isoelectric point5.14
Molecular weight71054.64
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16619
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     211.93|      78|     397|      67|     190|       1
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   67-  165 (107.36/169.02)	INTVF..DAKRLIGRRFSDASVqsdvklwpfkvvagpGDKPMIVVqyKGEEKQFAAEEISSMVL...............IKMKETAEAY...LGSTVKNAVVT..VPAyfndSQRQATKDA
  480-  579 (104.58/65.90)	INVCFdiDANGILNVSAEDKTT...............GQKNKITI..TNDKGRLSKEEIEKMVQdaekyksedeehkkkVEAKNTLENYaynMRNTIKDDKIAskLPA....ADKKKIEDA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     135.87|      41|     189|     170|     218|       2
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  170-  212 (63.64/44.47)	GLNVMRIINePTaAAIAYGLDKKAGSV.GEKN.....ILIFD.....LG....GGTFD
  221-  240 (23.39/21.54)	..................GIFEVKATA.GDTH...............LG....GEDFD
  362-  417 (48.84/24.33)	GKELCKNIN.PD.EAVAYGAAVQAAILsGEGNekvqdLLLLDvtplsLGletaGGVMT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16619 with Med37 domain of Kingdom Viridiplantae
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