<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16615

Description U-box domain-containing protein 35-like
SequenceMSHTEEDAFPLVAVAIDKDKGSQNALKWALDNIVTRGQTITLIHVNSKHTGSGAQEDHASAGSHSKDLFVPFRCFCTRKNVHCKDVILEDTDIAKAIIEFVSNAAIEKLVVGAPSKSGFVRFRTTDVATNISKGAPDFCTVYIISKGKVSSMRNAVRSAPAVSPYRAQIQNHASIKTEHVDPPRSYGIKGGAALEARNVQSEREPIRSPFTRGARASNAKSYAESIADSDISFVSGGRTSIDGIFNQRLSMSDGLDSSFEMQSPRRSVGGGYSFGTAFSSISQDSTSSSHAMEDVEAEMKRLRLELKQTMEMYSTACKEALTAKQKAMELHRWKMEEERRLEEARLAEGAALALAEKEKARCKAAIEAAEASKRIAELEAQKRINAEMKAFKEGEEKKRALDALAHTDVRYRKYTIEEIEVATEYFSEKRKIGEGGYGPVYRCYLDHTPAAIKVLRPDAAQGRSQFQQEVEILSCIRHPNMVLLLGACPEYGCLVYEYMANGSLEDRLFRRGNTPPIPWQHRFRIAAEISTGLLFLHQTKPEPLVHRDLKPANILLDQNYVSKIGDVGLARLVPPSVAENVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMLLQLITARPPMGLTHHVERAIEKGMFAEMLDPLVTDWPVEEALSLAKIALKCAELRRKDRPDLATVVLPELERLRSLAEENMQDCVFLGKSHTSPMHSQVSLPDILSGPLPGPSGYESSIIRSSASSMYGR
Length749
PositionTail
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.351
Instability index49.08
Isoelectric point7.29
Molecular weight82856.52
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16615
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.43|      32|      35|     234|     265|       1
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  234-  265 (57.03/35.81)	VSGG...RTSIDGIFNQRLSMSDGL.DSSFEMQSPR
  268-  303 (45.40/27.10)	VGGGysfGTAFSSISQDSTSSSHAMeDVEAEMKRLR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     265.48|      89|     292|      78|     168|       2
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   78-  168 (141.22/100.66)	RKNVHCKDVIlEDTDIAKAIIEFVS....NAAIEKLVVGAPSKSGF.......VRFRTTDVaTNISKGAPDFCTVYIISKGKVSSM.RNAVRSAPA....VSPYRAQ
  357-  461 (124.25/80.34)	KEKARCKAAI.EAAEASKRIAELEAqkriNAEMKAFKEGEEKKRALdalahtdVRYRKYTI.EEIEVATEYFSEKRKIGEGGYGPVyRCYLDHTPAaikvLRPDAAQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.02|      17|      17|     188|     204|       6
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  169-  185 (26.44/14.95)	IQNHASIKTE..HVDPPRS
  188-  204 (26.14/14.71)	IKGGAALEAR..NVQSERE
  206-  224 (21.44/10.86)	IRSPFTRGARasNAKSYAE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16615 with Med32 domain of Kingdom Viridiplantae
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