<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16614

Description mediator of RNA polymerase II transcription subunit 33A-like
SequenceMAVEDEAEDFGVGDLERRVMAAVKASEERGDPLLARAVEVGRSVREKGLGFPSPELGHVLVSNLCFSHNTPSLWKLLDQVMASRLIYPLHALALLARRVIPHRRAQPEAYRLYLELLSRYALSPPLVEAGPCRDKIVKSVDDSLQLSRTYGVHQMDFGHAVVLSILSFMTCLIDCTLEDCGFQLPFRDKHGNFYANEGHQVMEIDVKESSDERRNRHREQLRGTNALLAIEVVGKITSNKKAKVFLRLFYLNMPEKFNDLLERLQFIESHKSASQALLSANHILDSLSANIQKAMDWEYKLNRHQHLGVLFDDGPSSLLSCHIFGASRDACWITFDMFMENAMDGKQLHPISAIEILTELTKSLKVMNQASWQETFQALWISALRLIQRDREPLEGPIPHLDARLCMLLSIVPLAIVPLVKDEYEMPSLINNGITRSCVKGTEGSNFASKKHGLIFSLQVLGQFSGLLSPPPSVVNAANSAASKAATFISNLKTGSGNLGAPNRNDSSVKAVGNMLHLIVEACIARNLIDTSAYFWPGYVVPLTPSKDSLLVQESPWSTFMDGAPLNSLLKNALMASPATSVVELEKLYHIALNGSEEEKSAAAKILCGASLVRGWNIQEHVVRIVVKLLSPPVPPNSSVSGSGSNLIGHMSMLSAILFGVSCGDVIHILSLYGVIPDVAAALMPLCEAFGSLPPPFNHRSSISDETSVYAVFSCAFLFLLRLWKFYKPPHEHCLAGRGGPVSLELTLDYLLLMHNSRIALQNSSAIGRVGSITDPFQSTPSQPVYIDSFPKLRAWYFQNQACIASTLAGLCNKNPVHQVANKILNMIYRKMPKAGSVSGSPSSTSSSSISGSPMNATEDAHQRPTPTAWEFLEAVPFVLEAVLTACAHGRLSSRDLTTGLRDLVDFLPASLAAIISYFSAEITRGIWKPVPMNGTDWPSPAANLLSVESEIKEILASAGVHIASCYPRGMPPMLPLPLAALVSLTITFKLDKSLEYVHGIVGQALENCAAGCSRPSMPIIGALWTQKVRRWHDFIVLSCCLSPFIGDKEAVTQLIRSCFSSFLGPSITGGSLLSANRGVNGLLGQALADQGVRLPIAPGFLYLRTCRTFHDTRFVTDVILKLVIEWANKLGNEWACSRPARLRSGRMSLAAAVSGVKEVATLGASLLCSVGGVHLVQALYEESLPTLLLSAAEKLGGAGPVSNILEGYVMAYMVILSGAFVWGIGNTSPAYTSVYSSKRARVIEMHMDFVAGVVEGNISLGCDPAMWKAYVSCFVGLLVSFVPTWVPEVKQLTLRKLASGLRGWHECDLALSLLERGGPAAMDAVVESVL
Length1331
PositionTail
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy0.153
Instability index51.26
Isoelectric point7.20
Molecular weight144827.08
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16614
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.21|      10|     123|    1006|    1016|       4
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 1006- 1016 (17.32/14.78)	LENCAAgCSRP
 1131- 1140 (22.90/13.79)	LGNEWA.CSRP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     168.96|      55|     257|     401|     471|       5
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  411-  471 (79.50/69.35)	IVPL.AIVPLVKDEYeMP......SLINNGITRSCVkGTEGSNFASKKHGLIFSLQvLGQFsglLSPP
  669-  730 (89.46/67.27)	ILSLyGVIPDVAAAL.MPlceafgSLPPPFNHRSSI.SDETSVYAVFSCAFLFLLR.LWKF...YKPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.13|      11|     339|     317|     327|      10
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  317-  327 (21.46/14.30)	SLLSCHIFGAS
  652-  662 (19.67/12.37)	SMLSAILFGVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     160.12|      55|     212|     940|     998|      12
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  940-  998 (84.60/53.12)	SPAANLLSVEsEIKEILAS.....AGVH.IASCYPRGMPPMLplpLAALVSLTITFKLDKSLE.YV
 1149- 1210 (75.53/37.31)	SLAAAVSGVK.EVATLGASllcsvGGVHlVQALYEESLPTLL...LSAAEKLGGAGPVSNILEgYV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.33|      21|     572|     731|     752|      13
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  731-  752 (34.26/25.86)	HEhC.....LAGRGGPVSLELTLDYLL
 1306- 1331 (32.07/18.42)	HE.CdlalsLLERGGPAAMDAVVESVL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16614 with Med33 domain of Kingdom Viridiplantae
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