<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16613

Description U-box domain-containing protein 35 isoform X2
SequenceMSPTEGATFPLVAVAIDKDKGSQNALKWALDNIVDRGQTITLIHVNTKHPAPGHQEDPTFAGSHSKDLFVPFRCFCTRKNVQCKDIILEDTEIAKAIIEFVSHAAIEKLVVGAPSKSGFGRFRTTDVSTSISKGAPDFCTVYIISKGKVSSMRNAVRAAPAVSPFRAQIQNQTSIRSEHVDPHHPHGVRGEAALENWNVQSEREPIRSPFTRGTRVLTGKSYTESIGDSDISFVSGGRPSINRIFNQRSSNMSDGLDSSFEMQSPHKSVGGGFSCGTAFSSMSQDSTPSSLTMEDVEAEMKRLRLELKQTMDMYSTACKEALTAKQKAKELHHWKMEEERRLEEAHMAEEAALALAEKEKARCKAAIEAAEASKRIAKLEAHKRINAEMKALKEAEEKKRALDALAHTDVRYRKYTIEEIEVATEYFSEKRKIGEGGYGPVYKCYLEHTPVAIKVLRPDAAQGRSQFQQEVEILSCMRHPNMVLLLGACPEYGCLVYEYMANGSLEDRLFQQGNTPPIPWQHRFRIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVAENVTQYRMTSTAGTFCYIDPEYQQSGMLGVKSDIYSLGIVLLQLITARPPMGLTHHVEHAIEKGTFTEVLDPSVIDWPVEEALSLANIALNCAELRRKDRPDLATIVLPELERLRNLAEENMQHCASFGSSHTSPIHSQVSFPDVLSPLPGQSGYESSITRSSASSMYGR
Length749
PositionTail
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.385
Instability index52.70
Isoelectric point6.62
Molecular weight83052.49
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16613
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     104.94|      28|      28|     227|     254|       1
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  210-  227 (23.35/10.26)	.....FTR.....G.....TRVLTGKSYTESIG
  228-  255 (51.50/30.76)	DSDISFVS.....GGRPSINRIFNQRSSNMSDG
  257-  283 (30.10/15.18)	DSSFEMQSphksvGGGFSCGTAF....SSMS..
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.23|      31|      48|     318|     364|       2
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  320-  362 (38.15/53.99)	EALTAKqkakelhhwkmEEERRLE..EAH...MAEEAALALAEkEKAR
  365-  400 (41.07/15.83)	AAIEAA...........EASKRIAklEAHkriNAEMKALKEAE.EKKR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.28|      11|      28|     412|     423|       3
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  412-  423 (15.07/14.48)	YRKYtIEEIEVA
  442-  452 (22.22/15.57)	YKCY.LEHTPVA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     325.28|      97|     110|     516|     613|       4
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  516-  613 (166.05/109.46)	PPIPWQHRFRIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVA..ENVTQYRMTSTAgTF..CYIDPEYQQSGMLGVKSDI
  628-  728 (159.23/100.37)	PPMGLTHHVEHAIEKGTFTEVLDPSVIDWPVEEALSLANIALNCAELRRKDRPDLATIVLPELErlRNLAEENMQHCA.SFgsSHTSPIHSQVSFPDVLSPL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.88|      21|      29|     156|     177|       6
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  156-  177 (31.28/25.90)	VRAAPAVSPFRAQiQNQTSIRS
  188-  208 (36.60/25.26)	VRGEAALENWNVQ.SEREPIRS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16613 with Med32 domain of Kingdom Viridiplantae
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