<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16611

Description probable mediator of RNA polymerase II transcription subunit 26c isoform X2
SequenceMDAEDLRRVMRSMGVDLWTLIETALDVAATDYGKELRARRDGIVERLYAAGLVAADGCRNCAPGAEAERLAAVGLPTGGVEGKGSSSPAAGKGATAASPLSMNGDEKGEEREGEDDDHPIDDKTKILAIKEFLEDPDQTEDSLVSLLQNLADMEITFQNLKETDIGRHVNGFRKHPSPEVRQLVKLLVRRWKHIVDEWVKSSSAGDTASPANITDGDSPQQIPVKNSNQNGHHQASEFGYLPYPPKGYVSSERNGGESVEPKPKAAPRKEVPAKPNRYSPPSAASPPANANEQRHSLLDPERLASARRRLHENYQEAQNAKKQRTIQVMDIHEIPKPKNSFVRNKGSGFQAKHW
Length354
PositionUnknown
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.05
Grand average of hydropathy-0.817
Instability index51.67
Isoelectric point6.24
Molecular weight38828.83
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16611
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.07|      20|      22|      45|      65|       1
---------------------------------------------------------------------------
   45-   64 (38.86/30.97)	ERLYAAGL....VAADGCRNCAPG
   68-   91 (29.22/16.01)	ERLAAVGLptggVEGKGSSSPAAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.75|      19|      38|     129|     147|       4
---------------------------------------------------------------------------
  129-  147 (30.98/22.73)	IKEFLEDPDQTEDSLVSLL
  169-  187 (32.77/24.51)	VNGFRKHPSPEVRQLVKLL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16611 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LAAVGLPTGGVEGKGSSSPAAGKGATAASPLSMNGDEKGEEREGEDDDHPIDDKTKILAIKEF
2) VKSSSAGDTASPANITDGDSPQQIPVKNSNQNGHHQASEFGYLPYPPKGYVSSERNGGESVEPKPKAAPRKEVPAKPNRYSPPSAASPPANANEQRHSLLDPERLASARRRLHENYQEAQNAKKQRTIQVMDIHEIPKPKNSFVRNKGSGFQAKHW
70
199
132
354










Molecular Recognition Features






MoRF SequenceStartStop




1) AIKEFL
2) FGYLPY
3) FQAKHW
4) LLVRRWKH
5) RKEVP
128
238
349
186
268
133
243
354
193
272