<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16610

Description probable mediator of RNA polymerase II transcription subunit 26c isoform X1
SequenceMLLERTENGKKLIARGWGRGACAKFPPSFLSSTPSSHRFSPSRFLFRFLEGEGSEPRPLLSSLGAERAPKEERGPARKGGGARAMDAEDLRRVMRSMGVDLWTLIETALDVAATDYGKELRARRDGIVERLYAAGLVAADGCRNCAPGAEAERLAAVGLPTGGVEGKGSSSPAAGKGATAASPLSMNGDEKGEEREGEDDDHPIDDKTKILAIKEFLEDPDQTEDSLVSLLQNLADMEITFQNLKETDIGRHVNGFRKHPSPEVRQLVKLLVRRWKHIVDEWVKSSSAGDTASPANITDGDSPQQIPVKNSNQNGHHQASEFGYLPYPPKGYVSSERNGGESVEPKPKAAPRKEVPAKPNRYSPPSAASPPANANEQRHSLLDPERLASARRRLHENYQEAQNAKKQRTIQVMDIHEIPKPKNSFVRNKGSGFQAKHW
Length438
PositionUnknown
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.05
Grand average of hydropathy-0.790
Instability index51.20
Isoelectric point8.75
Molecular weight47953.14
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16610
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.65|      14|      14|      55|      68|       1
---------------------------------------------------------------------------
   55-   68 (23.82/12.40)	EPRPLLSSLGAERA
   71-   84 (24.83/13.24)	EERGPARKGGGARA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     152.94|      47|     112|       6|      54|       2
---------------------------------------------------------------------------
    6-   54 (79.38/48.72)	TENGKKLIARgwGRGACAKFPPSFLSSTPSSHRFSPSRFLFRF.........LEGEGS
  114-  169 (73.56/38.56)	TDYGKELRAR..RDGIVERLYAAGLVAADGCRNCAPGAEAERLaavglptggVEGKGS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16610 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EAERLAAVGLPTGGVEGKGSSSPAAGKGATAASPLSMNGDEKGEEREGEDDDHPIDDKTKILAIKEF
2) LLSSLGAERAPKEERGPARKGGGARAMDAED
3) VKSSSAGDTASPANITDGDSPQQIPVKNSNQNGHHQASEFGYLPYPPKGYVSSERNGGESVEPKPKAAPRKEVPAKPNRYSPPSAASPPANANEQRHSLLDPERLASARRRLHENYQEAQNAKKQRTIQVMDIHEIPKPKNSFVRNKGSGFQAKHW
150
59
283
216
89
438










Molecular Recognition Features






MoRF SequenceStartStop




1) RFLFRFLE
43
50