<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16609

Description mediator of RNA polymerase II transcription subunit 36a-like
SequenceMRPPRGGGRGAGPRGRSDGGGGRGRGRGFGGRGGDRGGGRGGGRGGGRGGGRGGGRGGRGRGGGMKGGSKVIVQPHRHDGVFVAKGKEDALCTRNLVAGDSVYGEKRISVQNEEGTKVEYRIWNPFRSKLAAAIIGGVDNIWMGPGSRVLYLGAASGTTVSHVSDLVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPARYRMLVGMVDVIFSDVAQPDQARILALNASYFLKNGGHFVISIKANCIDSTVPAEAVFAQEVKKLQAEQFKPAEQVTLEPFERDHACVVGGYRMPKKQKVATES
Length311
PositionUnknown
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.442
Instability index34.86
Isoelectric point10.34
Molecular weight32802.88
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16609
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.14|      18|      19|      30|      47|       1
---------------------------------------------------------------------------
   30-   47 (44.04/10.79)	GGRGGDRGG.GRGGGRGGG
   50-   68 (37.10/ 8.16)	GGRGGGRGGrGRGGGMKGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.53|      14|      17|     199|     212|       3
---------------------------------------------------------------------------
  199-  212 (25.53/18.06)	IIEDARHPARYRML
  219-  232 (24.00/16.59)	IFSDVAQPDQARIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.81|      12|      22|     122|     133|       5
---------------------------------------------------------------------------
  122-  133 (23.44/17.96)	IWNPFRSK...LAAA
  141-  155 (19.37/13.38)	IWMGPGSRvlyLGAA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16609 with Med36 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MRPPRGGGRGAGPRGRSDGGGGRGRGRGFGGRGGDRGGGRGGGRGGGRGGGRGGGRGGRGRGGGMKGGSKVIVQPHRHD
1
79










Molecular Recognition Features






MoRF SequenceStartStop




1) MRPPRGGGRGAGPRGRSDGGGGRGRGRGFGGRGGDRGGGRGGGRGGGRG
1
49