<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16608

Description U-box domain-containing protein 33-like isoform X2
SequenceMNKSLDEYLDICACFKVQAEKLVFETDDVSKGLVELIAQHGITKLVMGAAADKHYSRKMKELRSKTALSVQQQADPSCKIWFVCRGNLIYMRDADQDGSGMVQSPTASSSSMSSQSEQLRSESLPQGQSELWNLLANPRHEDFRHRSRSVDFNSHGGAMSTALPHEGLTSPGSSKPSVTDPWEGITRSLQCSDLSLCSVSEEGLSSVGLTPALKDEGREEGSLSLPSVYESEDLQFSSLHHGLDDVGTHDEAYEKLQLALMEAENLKCEAYEEYWKRQKAERDLFEATRRVKAAENLYTKEMKERKKIEETLARERMELEKLKKQRDDIFEELKKACEKRVALEIQITDSDCTVKNFEEKLSETHDLLNLLRLEHEKLRSERDNTVREVETQHQTKAEMTSSTHGTTNFSEFSYAELKQATLDFDDSLKIGEGGYGSVYNGFLRHTTVAIKMLNPQSMQGQSEFHQEVAVLGRVRHPNLVTLIGACPEAGALIYEFLPNGSLEDRLICRDNTPALSWQIRTRITAEICSALIFLHSNKPRGVVHGDLKPANILLDANFTSKLGDFGICRFLVQSNTSTTLYCHTHPKGTFAYMDPEFLTSGELTPHSDVYSFGVIILRLLTGRPALGVINKVREALEKGCLDEILDASAGGWPYAQAKQLAHLGLKCCEAKRKRRPDLTGEAWKVLEPMMKAVSSKGLSCLSLRSALEDNNCIPSFFICPISQEILKDPHVAADGFSYEAEAIKGWLDSGHETSPMTNLKLPHRGLVPNRALRSVIQQWLQQ
Length782
PositionTail
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.455
Instability index47.26
Isoelectric point5.79
Molecular weight87496.15
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16608
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     173.81|      47|      54|     316|     369|       1
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  261-  313 (43.33/22.35)	.MEAENLKceayeeywkrqKAERDLFEATRrvKAAENLYTKEMK......ERKKIEETL.......A
  316-  369 (72.44/54.61)	RMELEKLK...........KQRDDIFEELK..KACEKRVALEIQITDSDCTVKNFEEKLsethdllN
  372-  411 (58.04/30.29)	RLEHEKLR...........SERDNTVREV......ETQHQTKAEMTSSTHGTTNFSE..........
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     230.05|      73|     634|       5|      84|       2
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    5-   84 (117.26/88.71)	LDEYLDICAC..FKVQAEKLvfetddVSKGLVELIAQHGITKLVMGAAAdKHYSRKMKELRSK..TALSVQQQ.ADPSC.KIWFVC
  641-  719 (112.79/69.41)	LDEILDASAGgwPYAQAKQL......AHLGLKCCEAKRKRRPDLTGEAW.KVLEPMMKAVSSKglSCLSLRSAlEDNNCiPSFFIC
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     195.67|      63|     332|     100|     212|       3
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  119-  187 (99.13/101.59)	LRSESLpQGQSELWN...LLANPRHEDFrhrSRSVDFNSHGGAM.STALPHEGLTSP...GSSKPSVTdpWEGITR
  453-  522 (96.54/47.79)	LNPQSM.QGQSEFHQevaVLGRVRHPNL...VTLIGACPEAGALiYEFLPNGSLEDRlicRDNTPALS..WQIRTR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16608 with Med32 domain of Kingdom Viridiplantae
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