<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16607

Description U-box domain-containing protein 33-like isoform X1
SequenceMERRGYGSPASVRSWGSARSGLTEIEEEPAVAEEAAEDVKVYVALGKEVKEGKANLLWVLEKTSREKKIVILHVHRPAQKIPMMGAWFPVNQLKEREVEAYWQLEREKMNKSLDEYLDICACFKVQAEKLVFETDDVSKGLVELIAQHGITKLVMGAAADKHYSRKMKELRSKTALSVQQQADPSCKIWFVCRGNLIYMRDADQDGSGMVQSPTASSSSMSSQSEQLRSESLPQGQSELWNLLANPRHEDFRHRSRSVDFNSHGGAMSTALPHEGLTSPGSSKPSVTDPWEGITRSLQCSDLSLCSVSEEGLSSVGLTPALKDEGREEGSLSLPSVYESEDLQFSSLHHGLDDVGTHDEAYEKLQLALMEAENLKCEAYEEYWKRQKAERDLFEATRRVKAAENLYTKEMKERKKIEETLARERMELEKLKKQRDDIFEELKKACEKRVALEIQITDSDCTVKNFEEKLSETHDLLNLLRLEHEKLRSERDNTVREVETQHQTKAEMTSSTHGTTNFSEFSYAELKQATLDFDDSLKIGEGGYGSVYNGFLRHTTVAIKMLNPQSMQGQSEFHQEVAVLGRVRHPNLVTLIGACPEAGALIYEFLPNGSLEDRLICRDNTPALSWQIRTRITAEICSALIFLHSNKPRGVVHGDLKPANILLDANFTSKLGDFGICRFLVQSNTSTTLYCHTHPKGTFAYMDPEFLTSGELTPHSDVYSFGVIILRLLTGRPALGVINKVREALEKGCLDEILDASAGGWPYAQAKQLAHLGLKCCEAKRKRRPDLTGEAWKVLEPMMKAVSSKGLSCLSLRSALEDNNCIPSFFICPISQEILKDPHVAADGFSYEAEAIKGWLDSGHETSPMTNLKLPHRGLVPNRALRSVIQQWLQQ
Length890
PositionTail
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.471
Instability index47.92
Isoelectric point5.87
Molecular weight99839.17
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16607
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     173.81|      47|      54|     424|     477|       1
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  369-  421 (43.33/29.47)	.MEAENLKceayeeywkrqKAERDLFEATRrvKAAENLYTKEMK......ERKKIEETL.......A
  424-  477 (72.44/71.83)	RMELEKLK...........KQRDDIFEELK..KACEKRVALEIQITDSDCTVKNFEEKLsethdllN
  480-  519 (58.04/39.90)	RLEHEKLR...........SERDNTVREV......ETQHQTKAEMTSSTHGTTNFSE..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.72|      17|      42|      48|      67|       2
---------------------------------------------------------------------------
   48-   67 (24.18/21.35)	EVKEGKANLLWVLEktsREK
   92-  108 (30.55/18.26)	QLKEREVEAYWQLE...REK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     329.31|      90|     332|     208|     320|       3
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  227-  320 (147.99/123.42)	LRSESLpQGQSELWN...LLANPRHEDFrhrSRSVDFNSHGG...AM.STALPHEGL...TSP...GSSKPSVT.DPWEGITR..SLQCSDL.SLCSVSEEGLSSVGLTPA
  561-  658 (128.84/68.98)	LNPQSM.QGQSEFHQevaVLGRVRHPNL...VTLIGACPEAG...ALiYEFLPNGSL...EDRlicRDNTPALS...WQIRTRitAEICSALiFLHSNKPRGVVHGDLKPA
  756-  814 (52.47/20.71)	......................................SAGGwpyAQ.AKQLAHLGLkccEAK...RKRRPDLTgEAWKVLEP..MM........KAVSSKGLSCLSLRSA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16607 with Med32 domain of Kingdom Viridiplantae
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