<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16606

Description probable mediator of RNA polymerase II transcription subunit 37c
SequenceMAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAINPINTVFDAKRLIGRRFSDASVQNDMKLWPFKVVAGPGDKPLIAVQYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVIAGLSVMRIVNEPTAAAIAYGLDRKAGSAGEKNILIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRMVSHFVQEFKRKHKKDISGNPRALRRLRTACERAKRNLSSTAQTTIEIDSLFEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHEVVLVGGSTRIPRVQQMLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLVQVYEGERTRTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKDTRQKNKITITNDKGRLSKEEIEKMVREAEKYKAEDEKHKKKVEAKNALENYAYNMRNTIRDDKIASKLAAADKKKIEDAIEQAINWPDSNQRAEADEFEDKLKELEGICNPIIANMYQGAGADMAGGMAEDGPAAGGSGAGPKIEEVD
Length648
PositionUnknown
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.402
Instability index33.39
Isoelectric point5.35
Molecular weight70916.56
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16606
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      75.08|      18|      21|      38|      55|       1
---------------------------------------------------------------------------
   16-   33 (19.08/10.41)	..T..TYSCVGVWQHDRveIIA
   38-   55 (32.55/22.67)	NRT..TPSYVAFTDSER..LIG
   60-   78 (23.45/14.39)	NQVaiNPINTVF.DAKR..LIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.55|      45|     189|     170|     218|       2
---------------------------------------------------------------------------
  170-  218 (62.32/54.10)	GLSVMRIVNePTaAAIAYGLDRKAG.SAGEKNILIFDLggGTFDVSLLTI
  362-  407 (71.23/45.10)	GKELCKSIN.PD.EAVAYGAAVQAAiLSGEGNEKVQDL..LLLDVTPLSL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16606 with Med37 domain of Kingdom Viridiplantae
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