<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16605

Description heat shock cognate 70 kDa protein 2-like
SequenceMAKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPSVQSDMKLWPFKVIAGPGDKPMIVVQYKGEEKQFSAEEISSMVLMKMKEIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKASSSGEKNVLIFDLGGGTFDVSILTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSGIHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQINVCFDIDANGILNVTAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKKKIEAKNALENYAYNMRNTIKDEKIAAKLPPADKKKIEDAIEQAINWLDGNQLAEADEFEDKMKELESICNPIIAKMYQGAGAGMDAGMDEDAPAAGGSSSGAGPKIEEVD
Length649
PositionUnknown
OrganismPhoenix dactylifera (Date palm)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.422
Instability index36.44
Isoelectric point5.18
Molecular weight71202.98
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16605
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     150.62|      50|      74|     411|     465|       1
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  411-  465 (75.27/64.33)	AGGVMTVLIPRNTTipTKKEQVFSTysdNQPGVLIQ......VYEGERTRTRDNNLLGKFE
  487-  542 (75.35/49.05)	ANGILNVTAEDKTT..GQKNKITIT...NDKGRLSKeeiekmVQEAEKYKAEDEEHKKKIE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     150.43|      46|      74|     212|     260|       2
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  213-  260 (75.26/40.43)	SILTIEEGI..FEVKATAGDTHLGGEDFdnRMVNHFVQEFKRKHKKDISG
  288-  335 (75.17/38.66)	EIDSLYEGIdfYSTITRARFEELNMDLF..RKCMEPVEKCLRDAKMDKSG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.44|      35|     189|     169|     205|       3
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  169-  205 (51.76/42.91)	GLNVMRIINePTaAAIAYGLDKKAS.SSGEKNVLIFDL
  361-  396 (56.68/37.40)	GKELCKSIN.PD.EAVAYGAAVQAAiLSGEGNEKVQDL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.27|      18|      21|      37|      54|       4
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   15-   32 (19.08/10.69)	....TTYSCVGVWQHDRveIIA
   37-   54 (32.67/23.54)	NR..TTPSYVAFTDTER..LIG
   59-   77 (24.52/15.84)	NQvaMNPTNTVF.DAKR..LIG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16605 with Med37 domain of Kingdom Viridiplantae
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