<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16579

Description Cyclin-like protein
SequenceMATDFWASSHYNRWMVDRATLKQARAEDSQYVDDEEYLNFLPIFFANLIAKLGKKLQMRQRVIATATIFFKRFYVKNSYCDTDPFIVIAACCYVAAKAEEAPVHIKNVVSEARMLFNNEELGAKSFSPDHSKLAEMEFYLVDDLECDLTVFHPYRTLMALCGKDGSAAEAGELGAGVDDGPRYWGTGEGKLELQEGALQMAWFIINDTYRSDLPLLYPPHLIAIAAIYLTLVLHSSTRALLHAQTNTQSAGSASSAHASAQQGSARRSSRSSSAHAKKAPQDIVGFMAGLNVSMPLVATLAQEIIALYVRWERYREDAHATQQDSARGAFAHTYAKRAASVGSAGTASTGATPSADEPSAQGPGERVPLVVTPALMMQVLANMRERCQRDREMAAHGQGGRTVAVNKVLERAQAAG
Length416
PositionKinase
OrganismWolfiporia cocos (strain MD-104) (Brown rot fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Polyporales> Wolfiporia.
Aromaticity0.08
Grand average of hydropathy-0.193
Instability index37.76
Isoelectric point6.47
Molecular weight45463.01
Publications
PubMed=22745431

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16579
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     214.36|      68|      72|     256|     327|       1
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  256-  327 (105.63/88.68)	AHASAQQGSARRSSRSSSAHAKKAPQDIVGFMAGLNVsmPLVAT..LAQEIIA.LYVRWERYREdaHATQQDSAR
  331-  401 (108.73/77.70)	AHTYAKRAASVGSAGTASTGATPSADEPSAQGPGERV..PLVVTpaLMMQVLAnMRERCQRDRE..MAAHGQGGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.67|      23|      63|     135|     160|       2
---------------------------------------------------------------------------
  135-  157 (43.49/27.21)	EMEFYLVDD.LECDLTVFHP.........YRTL
  199-  231 (32.18/12.68)	QMAWFIINDtYRSDLPLLYPphliaiaaiYLTL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16579 with CycC domain of Kingdom Fungi
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