<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16576

Description Uncharacterized protein
SequenceMANGEQDPLPIYELHPPDWLPKAHASADLGYIGFYPPRPDEVEEVLTETNVKNGLILNLSVPAETYSQQDSIKNSLIYENAVTELEDLMNMIFARRAENVPAVPQSTFRMPSRITLNDAKREAWFTDLANPDVPLYKLGKNVPHGAKGHDLLDLLHMKNVAIPRAVWFLRVFGGNETAGLRNKPGYNPTQYSIEWANVVTGYIRKQLADIALPTAPRPGLNIKQTFKSKLADQDSRENWISRFTYSLELLRSFYSEGLVDNKTFLAWLVQQVGSCNLAQLGFVARLADEYLDGMLISRALTHHFVEACLSKLAEIRSTSAKDHLTNLEAMLKNLVTQCFLALPDAFVSPRMWATHCNLVEEILAESIEMSGSDGIPAQNIQALQQTCADRFADVKRRNEAMFFRQLPPRVVGSLTSALTDIKLLNSLSGQTDMSTIIFFEDAPAFVRKLDTLLTWSVTGLQYGDHRPYAAACLLRQWRAKAGARALRHEAESPDVYIQDSVFDWLDSSTDAADPDNLPAVALLFGQLVKDGLFSYQEYIQRLIARGEPGLSFSEEEHSRHRNFLRWIPLHSSDSSLIRQRKVTLYGVRARETPEDAHEREIRKEIRALFPEVFGGLPSTEPLTTTFWESCSTLLSSPRYEQVRTIKQWFLPIIRKHIASQAQVDTSNNGDILKTYTLSIILMARTRCYGSILDLTLYALERATTLQLLTVVIETLRQHMEVWACMDVMRTVAGALYSAHQFWRNRGIQTRALLCLLMKVDHEQYLEPEQRGQINSDISAYSHALYPGNHQSDSVPVILPEILLLATDSNVEAPSNLAKSLWYKYMTASDWAWNVWDNTIASLRQVPVMIPDLEGRRACALRYANFLWHVDQHLPRGFDKQVLDWFLGAGKNEVAALSPEAWDVVTVVLLHLCVCGALNTTSILKGLIYPVWQTGAYTTSLEQGQALEVLLTAANNLFEHLLIKDECGNGLPPADIFEAQGLQTRRRDVFREPHFSLMVESMPALVLIEQNAYLPENVKLECGRLRQAICRVSVFRLGVYRDLDAVRLAFQKLLECRSIPEELHEPLVTALRLMLRDPGQATDNTGFVAVSSLLTPWKLAATSIEVRLTLKQLGEGLSRESTRNVANATLNKLSTFVYQQCKTPEEADFVAEMMTDVDREVAGKFVNAGLQRIIEIFREPFATTDPKTMVQFVSDAGEVLRLLSKIVERFRSDGSLPPLLQPIQDQFITALDFRFAEVVSGRTGELDDSQARELSHSAIFLARLLQFNLGFPGAWTSQTKAVSERLCKTLTELALIHGEGEELDAVAFPLLLDTLHYVLDEAPSDPKATTCDPFRNYPNIALADLPAGMPPAYRARFRTLLPHFALNAAVDGLAYATRDPSTGALTLTQPVQNRPWEWTEFLGDVPPGGEEHDMDPFVVKNSASLNLELFEARATGERLINSDEPAAVYAFQDSLSSESVFMRDWRETRVISDQGVRC
Length1477
PositionKinase
OrganismWolfiporia cocos (strain MD-104) (Brown rot fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Polyporales> Wolfiporia.
Aromaticity0.09
Grand average of hydropathy-0.158
Instability index43.78
Isoelectric point5.42
Molecular weight165972.41
Publications
PubMed=22745431

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16576
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.91|      24|      46|    1307|    1350|       1
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 1307- 1332 (40.80/53.82)	FPLLLDtlHYVLDEAPSDPKATTCDP
 1356- 1379 (43.10/15.17)	FRTLLP..HFALNAAVDGLAYATRDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.01|      43|      44|    1155|    1197|       2
---------------------------------------------------------------------------
 1155- 1197 (71.07/45.68)	DVDREVAGKFVNAG.LQRIIEIFREPFATTDPKTMVQFVSD.AGE
 1200- 1244 (61.94/38.81)	RLLSKIVERFRSDGsLPPLLQPIQDQFITALDFRFAEVVSGrTGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.15|      28|      47|    1053|    1083|       4
---------------------------------------------------------------------------
 1053- 1083 (45.16/36.50)	LECRSIPEELHEPLVtalRLMLRDPGQATDN
 1103- 1130 (44.99/28.39)	IEVRLTLKQLGEGLS...RESTRNVANATLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.71|      33|      47|     450|     482|       5
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  450-  482 (59.72/32.63)	DTLLTWSVTGLQYGDHRPYAAACLLRQWRAKAG
  499-  531 (55.99/30.16)	DSVFDWLDSSTDAADPDNLPAVALLFGQLVKDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.01|      40|      41|      61|     101|       6
---------------------------------------------------------------------------
   61-  101 (62.94/43.24)	VPAETYSQQDSIK.NSLIYENAVTELEDlMNMIFARRAENVP
  103-  143 (67.07/41.93)	VPQSTFRMPSRITlNDAKREAWFTDLAN.PDVPLYKLGKNVP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16576 with Med12 domain of Kingdom Fungi
Unable to open file!