<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16543
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MPLILDNPMPVELNDVDDLFGDGVGLSLPARAQSKQLQQRMDDVRIRGCCQTVAWSRTGTIANITPDGQNLELRFLRRSPEDGSWDLSEPTTCPFVKGLPTIPIVHLVWAGTSSPDLAVIDAVGRVSIVSFSISLNHPFPQRKWDADPTDDVHAVVGAYWLNVSPPNQQASYNVMYGPATKHGNGYTYESSFVHAGGPTHPSPAKSALLTITTHGVIRMFWSQNTNRLEETTMELESISASDELITHASFASEKKHLLLAVATTSKQLKLIKIEIQWGQASQADKATGRPAGNLSPSLVEKHLATTNWLQGGPGDSSLDISMIELSHLEVLPSVVDSTGKNTTPPMVVTARSRTPTESSYQGSQSVVDRWEAIEQKQNLPSAYEQLGGRRNSISSELPAVTQLQKVAPVTANKVVVAFQTTSFGKILVLAFADGTVEYRDRLTFEELYTTQELNKVQNLRQIGWTFTDEGPCQQVAFSPTFCSMVQMGEDGKIKWNKLHYPMGDIGNSMHDAQYCGSIAALTVTAAPSMFYQNNYDDLLAIVRPYTTKKRFVQDLVTELIRILKIQIDYSEEIHHDSLVRNGSLQYCLSIMNALGFRGDFHPRSFQGKFSMLFLNVRNVVVLITIASNTPVTVREKLSPLDDPEVIETLVGCARWALDLIAWLMDCLFELMNDNHFQELLTRERFHELAPYLHEKNNVAFHFLMSSSSRGFLSAICRRLAHLEALSGRAIEFYRKQSAVVEGVAGGRAAPQLQQAYQAMQQVTSSALVKVSEVETLLTGLSNEIRQAYQIFLPSLAKSQNNQSQGKQLDMTMKAARVQMELSILLSAAPPAPFLQIIKKFFNTDLPAFRNTVNPGRLFFANYDLLEVEDDEHSLAAKKARGMVYVDVFKRMQIRPSPNKQWRRCSRCTAVMEDVFGSRSGFTFVLGQQRKCSCGGQWTLLPKGHVA |
Length | 946 |
Position | Tail |
Organism | Fusarium oxysporum f. sp. radicis-cucumerinum |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Hypocreomycetidae> Hypocreales> Nectriaceae> Fusarium>
Fusarium oxysporum species complex.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.201 |
Instability index | 47.65 |
Isoelectric point | 6.66 |
Molecular weight | 105185.78 |
Publications | PubMed=27387256
PubMed=28831051
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP16543
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 55.12| 14| 230| 75| 88| 1
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75- 88 (27.56/16.96) FLRRSPEDGSWDLS
308- 321 (27.56/16.95) WLQGGPGDSSLDIS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 46.32| 14| 19| 530| 543| 2
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530- 543 (24.36/16.79) FYQNNYDDLLAIVR
551- 564 (21.96/14.46) FVQDLVTELIRILK
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 87.28| 26| 180| 676| 747| 5
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394- 419 (41.38/ 7.40) SSELPAVTQLQKVAPVTANKVVVAFQ
676- 701 (45.91/95.70) FQELLTRERFHELAPYLHEKNNVAFH
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 146.59| 40| 53| 202| 241| 8
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175- 196 (25.38/13.70) ........................MYGPATKHGNGYTYESSFVHAG
202- 241 (64.62/47.47) SPAKSALLTITTHG......VIRMFWSQNTNRLEETTMELESISAS
252- 297 (56.59/40.55) SEKKHLLLAVATTSkqlkliKIEIQWGQASQADKATGRPAGNLSPS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 54.56| 17| 30| 740| 757| 9
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740- 757 (25.74/20.85) VEGVAGGrAAPQLQQAYQ
773- 789 (28.82/18.05) VETLLTG.LSNEIRQAYQ
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