<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16527

Description Mediator of RNA polymerase II transcription subunit 14
SequenceMPGVIMDHGSRNGSHTNHDRDQRQNGVNGVSRAAEKMQDKAKPRAEPLQSMTPTSPTILEGLNGNTTGPPRHENAANGTLRNLQAQMEQLPPEITHIADGYMPLSALLIRLAQKSHADLLSAMSDLAKMPTPAAAVNGSASHYSLTEDASQENVQKKLRLLNFATTTHESWTKALVITGWSRKSEEVSKLVDLRIHLEAQKLLYTEAIDSMANNKRAIHNFRLPNPDFRTALEVLTTGTASWMPDLNYIQPRPLTAKEVLRSLEKLNTLLSIRLNLDDYDSIPLQFRDFTIQSGRATFRVPGEFEIDLTIADEEPGSQYWFIDLRFIFRPSSSKMNAGIRWHLENKVNEVLLKDGLAGCYKYLHELILTYKIAEFRRQGDELARSIWIDTLKVEILNRPICIQYWIDRYSGRLLDGRPSNVKPSKSWIILGVHSGRRNDGRPDAKATSRLFIRWFRESKEVMDEDIWFDDVNISTESLLKTVIAKHINHILTSIYEKLLAKPLYAKRELEISLKLSSDDPADLEIKIQLTNEHRLSIKIDPVSGRFVFGPISRIYSHYEGLLNSVCQDPAADGHTAIERLRSALLTDAIQIHASSLSWSRVNNPGLSQDSLSQFVPKESLATIWFRRPGWVKDWYLAVTQSMSGEKWHLIKTAIKPTPVKSNAIGLGCLLELPIKGASPSTTYSFLSTLNIFAAGMLSHYTTARTLHSRRVHYVLGKGRLARSMTLPAIYAKLSELIPSKNRLPRTGRNWARDIIKIYFHGVEVIAQRPKDQAELVPSQSTVVSQVSAPSLQSSSALDSQKAFELDERSALVIEVRMVMPIPQALSNINEQLDKDIVFDAKTGSLAFRLQSKVGESFVPELIERIVGIERLVEFVQVLHLHDVTLKCETVSLGKLVFTYPNNNLVADPDVMDIDNVSPTYKATINFSAADNIMALVLESGNPHLRIADHLTKVLNGSEGLGGIATLLPLTLPVLRGLDAVETAWYVDDMFDKGEVVVNVRATDVYRLRYDIHLKSPLTANIPTITRKVGFEIKLRSRKAEAWWYVQRVDNSRQKGLDALDDALKSVWDMSGPDWRGMHVCAVAKSNGIEMLLVKLDEVVRNFVLSGKTLDSSFAAPPASAPALPKQASNPRMQQQQRQQQRHQQPLTNQNQSQGRNNTHNNQSREIVEID
Length1170
PositionTail
OrganismDiplocarpon rosae
KingdomFungi
Lineage
Aromaticity0.07
Grand average of hydropathy-0.313
Instability index47.50
Isoelectric point8.82
Molecular weight131367.59
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16527
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.65|      16|      20|      69|      87|       3
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   69-   85 (24.95/27.03)	PPRHENAANGTLrNLQA
   91-  106 (30.70/17.50)	PPEITHIADGYM.PLSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.90|      20|      21|     409|     428|       5
---------------------------------------------------------------------------
  409-  428 (38.62/23.17)	YSGRLLDGRPSNVKPSKSWI
  433-  452 (37.28/22.11)	HSGRRNDGRPDAKATSRLFI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.87|      10|      18|     282|     291|       6
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  282-  291 (19.47/11.97)	IPLQFR.DFTI
  300-  310 (14.40/ 6.94)	VPGEFEiDLTI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.70|      10|      20|    1006|    1015|       7
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 1006- 1015 (17.40/10.53)	RLRYDIHLKS
 1027- 1036 (16.30/ 9.42)	KVGFEIKLRS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.68|      14|      19|     898|     911|       8
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  898-  911 (26.40/19.36)	TY.PNNNLVADPDVM
  919-  933 (20.27/13.01)	TYkATINFSAADNIM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.38|      17|      22|     226|     247|       9
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  226-  247 (25.11/27.07)	PDFRTALEVLTTgtaswMPDLN
  251-  267 (29.27/16.68)	PRPLTAKEVLRS.....LEKLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.86|      13|      21|     595|     609|      10
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  595-  609 (21.41/19.08)	SLS..WSRvnNPGLSQD
  619-  633 (23.45/13.42)	SLAtiWFR..RPGWVKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.70|      17|     160|     501|     520|      11
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  501-  520 (23.97/20.16)	KPLYAK....RELEISLKLssdDP
  521-  541 (23.73/11.81)	ADLEIKiqltNEHRLSIKI...DP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.62|      31|     125|     325|     357|      19
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  325-  357 (47.43/46.93)	RFiFRPSSSKMNAGIrWHLE.NKVNEVLLKDGLA
  453-  484 (52.18/39.90)	RW.FRESKEVMDEDI.WFDDvNISTESLLKTVIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.42|      20|     388|     723|     745|      22
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  723-  742 (32.24/26.51)	SMTLPAIYAKLSELIPSKNR
  751-  770 (33.18/17.34)	ARDIIKIYFHGVEVIAQRPK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16527 with Med14 domain of Kingdom Fungi
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