<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16521

Description Mediator of RNA polymerase II transcription subunit 8
SequenceMAQASLTQEDIKILEQLRQRLSQLTNNIASQKSDLIRSNPLPPWVSLQTSASILAGNVESLTSLMARHSELLNRMVVYPSTNYPGRTQEGILTQLLRKKMEPQVETWVEEGRTTETQIMEGRTDEKSEEELLGWAKDWIGNRVVKYAMEEAGDNYTIEEREQGTKNVKTGLKRNLEEDESDDDEDEDEDEEMEDVGVAVTTVRRTSAGQVEFGLGELKKDPNAQSRSFDEILRFGASGRR
Length240
PositionHead
OrganismDiplocarpon rosae
KingdomFungi
Lineage
Aromaticity0.05
Grand average of hydropathy-0.834
Instability index57.73
Isoelectric point4.63
Molecular weight27194.82
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16521
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.34|      25|      28|      17|      41|       1
---------------------------------------------------------------------------
   17-   41 (40.76/29.47)	LRQRLSQLTNNIASQKSDLIRSNPL
   47-   71 (39.59/28.44)	LQTSASILAGNVESLTSLMARHSEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     133.27|      34|      60|      97|     131|       2
---------------------------------------------------------------------------
   97-  131 (51.29/29.93)	RKKMEPQVETWVEeGRTTETQIMEGRTDEKSEEEL
  133-  158 (31.71/13.76)	.....GWAKDWI..GNRVVKYAMEEAGDNYTIE..
  160-  192 (50.27/25.48)	REQGTKNVKTGLK..RNLEEDESDDDEDEDEDEEM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16521 with Med8 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EAGDNYTIEEREQGTKNVKTGLKRNLEEDESDDDEDEDEDEEMEDVGVAVTTV
150
202










Molecular Recognition Features






MoRF SequenceStartStop




1) MEDVGVAVTTVRRTSAGQVEFGLGELKKDPNAQSRSFDEILRFGASGRR
192
240