<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16520

Description RNA polymerase II transcription mediator
SequenceMLANQFVASLFYVHKHHDYQKLSPTDHIRQDPKNSEDGTALKEQDVIPYPADVFKAGQRELAQDLIMKEQQIEYLISSLPGLANSEKDQEEIIRQLEEELRAAELERKEAVKDKDEVLNKLEGVIRSVKRP
Length131
PositionMiddle
OrganismDiplocarpon rosae
KingdomFungi
Lineage
Aromaticity0.05
Grand average of hydropathy-0.775
Instability index59.96
Isoelectric point5.14
Molecular weight15124.89
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16520
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.77|      23|      23|      24|      46|       1
---------------------------------------------------------------------------
   24-   46 (39.19/24.39)	PTDHIRQDPKNSEDGTALKEQDV
   50-   72 (37.58/23.16)	PADVFKAGQRELAQDLIMKEQQI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.15|      15|      23|      87|     101|       2
---------------------------------------------------------------------------
   87-  101 (24.67/16.44)	KDQEEIIRQLEEELR
  112-  126 (24.49/16.28)	KDKDEVLNKLEGVIR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16520 with Med21 domain of Kingdom Fungi
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