<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16517

Description Transcription mediator subunit Med12
SequenceMTTRPSVGRQPPQRSLSSSGVVQRPPPLRTHSQQFSSSSPTRRGSDAFVDWTSEGEARHGSRIGASRLRVEISTDSKQTGALESPKQSSAATPTWRPLLPPRGRPQLHFDVPCISHSHPRGQHGGAIKPMPLPARPGQHAPPMSQKHKPSPTSTAKKDARPKPYTLEVPAAAPRYPPNGHADFYPWTGNHPEDQFSELAIRSGYYDKGAMTQNEIGSGRAAIFPALKHKSGLQTLSSIFTNVLAQRRAHGQITSGSTFKPPPRVTVTDTKRELWLKDLANTTIPLRRLSRSIPHGIRGKVLLDQSLSKNIPIERAVWLAKCVGANELRAFRRKGGSGTFAMGGEAKWIRDFTVCVEQFVDSVVGTCGEKDFKTRISYAIRLAAHFHAEQLLDREHFMDWLVASLENSPQTKLPMWLLITQVYWNDLSKYRKFGRRLSAALMNQLAETLNNPDRDILSPLSDRLKYLLKGLICSNTHNFLTPKMWQTYRGIFMSSEGLGDPPCGAVLAAIDRRNNRFIATGAMKEQGPRRRLISLLDTCLFEPFSNELPRSCWEIDSDKDLLALTVLEWATSSHRPGSTKIYAAVRIIRSWSRLGTDVTGSILDFLDTASRDSVCSKPALYHVVSELARSEHFSTPRYIQWLIARGGISAEADLAPDGPSSTRLLAELPMHNVSDSIIELRTALLSRAGLSTQDEDELVQECMAHINHSLPGMQASADVKLEGKGNWRPIGNSELPSGLSRTIRSELGLWLRQNVRLQMVQPTIPPLDQWDRSPMKGGTSALTALDFSTVRRYLEHLGDYSMLADVLKIVTSSSDAEVLASCADTLDAYIEVFAAIGALNDLFEVLASRLRTLTEETGLVPRTFLVSLSDLASRLPKHKVASQQLTQELARNDRKTAADAWSPVSDHMAIVETAEADFTDEIEKVLASGNSMDKATLERLFSRITLRLQASWEKPPEQQRSCALLLTRLRTFDAKQFDLLMVAWVGQFLQMQSRLSMMQVLGPLISFGCLAFRDVALGCRCSETEASPGSSYAPGTALELLCLLVAPCNLPGIMTPEEAYRLRIKQVHMQKYNHVDVLPVIRQAFAESYSNTCADSPRASEARALLTSREMYEFYQRVVLLDPVVFAQQLAFPLLQSSNHETVAAIDTSIDKLLVADKMVEPITTELLLNLADDLSLPFCQVKLASILQTRDAVTDGDEASQSEHLAAFDSAIESAVNAGKTSWASIIPLLDISIAQRLRRRAATQFLGMFPSPKTGSNDASVMNIRIQRAENLLLIIDATAHSTSDDAADPSNIALATDIVSTLNGTWLLLANTQSPEMRDTITSSWLPLLLSFITTHVLVFEATKQGHESRAKATLTLVAIYLQLKALDISTQAIHSLIEQSFDLALHLVDSLPEDIRLQCVRSLRDTTSNPEIAYLFSVASNATESLFLSQKERAPVIPGTGAAEARLAEKERLTPFVLRRWEILGEPTPNVGENDTSLSLTLFGARRG
Length1491
PositionKinase
OrganismDiplocarpon rosae
KingdomFungi
Lineage
Aromaticity0.07
Grand average of hydropathy-0.219
Instability index47.17
Isoelectric point7.98
Molecular weight164698.06
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16517
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.28|      13|      17|     288|     304|       1
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  288-  302 (17.87/17.38)	LSRSIPhgIRGKVLL
  306-  318 (24.41/ 8.47)	LSKNIP..IERAVWL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.53|      18|     234|     747|     766|       3
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  747-  765 (29.26/19.12)	GLWLRQNVRLQMVQpTIPP
  985- 1002 (32.27/12.25)	GQFLQMQSRLSMMQ.VLGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.28|      11|      14|     112|     123|       5
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  112-  123 (20.34/18.20)	PCISHSHPrGQH
  129-  139 (23.95/15.45)	PMPLPARP.GQH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.01|      22|      71|      10|      35|       9
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   10-   33 (34.45/20.21)	QPPQRSlSSSGVVQRP..PPlRTHSQ
   83-  106 (39.56/ 6.46)	ESPKQS.SAATPTWRPllPP.RGRPQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     208.48|      68|     261|     586|     656|      10
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  586-  656 (109.72/80.86)	IIRSWSRLGTDVTGSI.LDFL....DTASRDSvCSKPALYHVVSELARSEHFSTPRyiQWLIARGGI....SAEADLAPD
  844-  920 (98.75/62.40)	VLASRLRTLTEETGLVpRTFLvslsDLASRLP.KHKVASQQLTQELARNDRKTAAD..AWSPVSDHMaiveTAEADFTDE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16517 with Med12 domain of Kingdom Fungi
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